YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33152729, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	156 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33152729, gi|....

Description	E-value	Query Range	Subject Range
gi\|75437779, gi\|... - gi\|75437779\|ref\|ZP_00733503.1\| acyl-CoA hydrolase [Actinobacillus succinogenes 130Z], gi\|74275749\|gb...	156.0	[0..1]	[146..1]
gi\|126097237, gi... - gi\|126208445\|ref\|YP_001053670.1\| putative acyl CoA thioester hydrolase [Actinobacillus pleuropneumon... gi\|32034957 - gi\|32034957\|ref\|ZP_00135041.1\| COG1607: Acyl-CoA hydrolase [Actinobacillus pleuropneumoniae serovar ... gi\|165976399, gi... - gi\|165976399\|ref\|YP_001651992.1\| putative acyl CoA thioester hydrolase [Actinobacillus pleuropneumon... gi\|189915426, gi... - gi\|190150295\|ref\|YP_001968820.1\| putative acyl CoA thioester hydrolase [Actinobacillus pleuropneumon...	156.0	[0..1]	[154..1]
gi\|50084225, gi\|... - gi\|50084225\|ref\|YP_045735.1\| putative acyl-CoA thioester hydrolase [Acinetobacter sp. ADP1], gi\|4953...	152.0	[0..1]	[155..4]
gi\|52424791, gi\|... - gi\|52424791\|ref\|YP_087928.1\| hypothetical protein MS0736 [Mannheimia succiniciproducens MBEL55E], gi...	152.0	[0..1]	[147..1]
gi\|71848752, gi\|... - gi\|71909131\|ref\|YP_286718.1\| thioesterase superfamily protein [Dechloromonas aromatica RCB], gi\|7184...	150.0	[0..7]	[155..1]
gi\|110335861, gi... - gi\|121595165\|ref\|YP_987061.1\| thioesterase superfamily protein [Acidovorax sp. JS42], gi\|120607245\|g... gi\|222111506, gi... - gi\|222111506\|ref\|YP_002553770.1\| thioesterase superfamily protein [Diaphorobacter sp. TPSY], gi\|2217...	150.0	[0..7]	[155..1]
gi\|17430671 - gi\|17430671\|emb\|CAD17354.1\| putative acyl-coa hydrolase or thioesterase ; protein [Ralstonia solanac... gi\|17548424 - gi\|17548424\|ref\|NP_521764.1\| acyl-CoA thioester hydrolase-related protein [Ralstonia solanacearum GM...	150.0	[0..13]	[155..7]
gi\|39575518, gi\|... - gi\|42523312\|ref\|NP_968692.1\| Acyl-CoA thioester hydrolase [Bdellovibrio bacteriovorus HD100], gi\|395...	149.0	[0..8]	[155..22]
gi\|32267151, gi\|... - gi\|32267151\|ref\|NP_861183.1\| hypothetical protein HH1652 [Helicobacter hepaticus ATCC 51449], gi\|322...	148.0	[0..11]	[155..7]
gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], gi\|67086583\|g... gi\|67155639, gi\|... - gi\|67155639\|ref\|ZP_00417266.1\| Thioesterase superfamily [Azotobacter vinelandii AvOP], ref\|ZP_000907...	147.0	[0..7]	[155..1]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKNKPNEQP SGKLLLRTLA MPSDANANGD IFGGWIMSQM DLGGAILAKE VAKGRVVTVT  60
   61 VDKMIFHRPI SVGDVVCCYG SVVKVGRSSM QVKVEIFIKQ VYDGSRERFR VTEALFTYVA 120
  121 IDNIGKSRAI PRDNNPELDE ALVRIERCLA EQAIKS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1yliA
Description:	Structure of HI0827, a thioesterase acting on short-chain acyl-CoA compounds
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.66884012171138	bayes_pls_golite062009
thiolester hydrolase activity	0.78966333832473	bayes_pls_golite062009
catalytic activity	0.74605540351792	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.302743904610747	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: