YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|33152202, gi\|...
Organism:	Haemophilus ducreyi 35000HP
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|33152202, gi|....

Description	E-value	Query Range	Subject Range
gi\|32034034 - gi\|32034034\|ref\|ZP_00134278.1\| COG0350: Methylated DNA-protein cysteine methyltransferase [Actinobac... gi\|126097202, gi... - gi\|126208410\|ref\|YP_001053635.1\| methylated-DNA--protein-cysteine S-methyltransferase [Actinobacillu...	242.0	[0..1]	[184..1]
gi\|67908812, gi\|... - gi\|91787519\|ref\|YP_548471.1\| methylated-DNA--protein-cysteine methyltransferase [Polaromonas sp. JS6...	211.0	[0..4]	[171..6]
gi\|1075018 - gi\|1075018\|pir\|\|G64065 probable methylated-DNA-[protein]-cysteine S-methyltransferase (EC 2.1.1.63) ... gi\|16272351, gi\|... - gi\|16272351\|ref\|NP_438564.1\| methylated-DNA-protein-cysteine methyltransferase [Haemophilus influenz...	210.0	[0..2]	[182..12]
OGT_HAEIN - Methylated-DNA--protein-cysteine methyltransferase OS=Haemophilus influenzae GN=ogt PE=3 SV=2 OGT_HAEIN - Methylated-DNA--protein-cysteine methyltransferase OS=Haemophilus influenzae (strain ATCC 51907 / DS...	209.0	[0..2]	[182..1]
gi\|53733245 - gi\|53733245\|ref\|ZP_00156239.2\| COG0350: Methylated DNA-protein cysteine methyltransferase [Haemophil...	207.0	[0..2]	[182..1]
gi\|53732990 - gi\|53732990\|ref\|ZP_00155405.2\| COG0350: Methylated DNA-protein cysteine methyltransferase [Haemophil...	207.0	[0..2]	[182..1]
OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans GN=ogt PE=3 SV=1 OGT_METAC - Methylated-DNA--protein-cysteine methyltransferase OS=Methanosarcina acetivorans (strain ATCC 35395 ...	207.0	[0..5]	[165..1]
gi\|68057204, gi\|... - gi\|68249005\|ref\|YP_248117.1\| methylated-DNA--protein-cysteine methyltransferase [Haemophilus influen...	206.0	[0..2]	[182..11]
gi\|27359161, gi\|... - gi\|27367589\|ref\|NP_763116.1\| methylated DNA-protein cysteine methyltransferase [Vibrio vulnificus CM...	205.0	[0..6]	[164..3]
gi\|2935421 - gi\|2935421\|gb\|AAC25987.1\| adaptive response regulatory protein [Pseudoalteromonas sp. S9]	204.0	[0..2]	[170..182]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKNIYYQYY TSPVGQLLLI ANQQGLIGVE FEQEQLTRQT VEWQPISSND PMYAVFSKTC  60
   61 DLLDRYFAGE AVSFSQLDFL APQGTAFQQA VWQALRHIPY GKTTSYGKIA VRLGKPKAMR 120
  121 AVGGAVGRNP ISILVPCHRV LGKNNSLTGF GGGLATKRYL LTLEGVKFKD KGTEFVNPKQ 180
  181 KKWCP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	48.69897
Match:	1sfeA
Description:	ADA O6-METHYLGUANINE-DNA METHYLTRANSFERASE FROM ESCHERICHIA COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylated-DNA-[protein]-cysteine S-methyltransferase activity	3.81641972619245	bayes_pls_golite062009
S-methyltransferase activity	2.66007025371147	bayes_pls_golite062009
catalytic activity	1.90838528948382	bayes_pls_golite062009
DNA binding	1.54553435062678	bayes_pls_golite062009
nucleic acid binding	1.49720271661049	bayes_pls_golite062009
binding	1.30758209326705	bayes_pls_golite062009
transcription regulator activity	1.26332746912934	bayes_pls_golite062009
transferase activity	1.22815682532854	bayes_pls_golite062009
methyltransferase activity	1.14625481859451	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.13184530961695	bayes_pls_golite062009
transcription factor activity	0.99095733801135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: