| Protein: | SUB_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 768 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SUB_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
426.0 | [0..1] | [764..311] |
|
|
421.0 | [0..2] | [767..184] |
|
|
417.0 | [0..2] | [767..187] |
|
Region A: Residues: [1-366] |
1 11 21 31 41 51
| | | | | |
1 MSFTRWEVFF GLSVLALTMP FSAGVTNLRD VSAINNLYIT LGAPSLHHWL AFGGDPCGEK 60
61 WQGVVCDSSN ITEIRIPGMK VGGGLSDTLA DFSSIQVMDF SSNHISGTIP QALPSSIRNL 120
121 SLSSNRFTGN IPFTLSFLSD LSELSLGSNL LSGEIPDYFQ QLSKLTKLDL SSNILEGHLP 180
181 SSMGDLASLK ILYLQDNKLT GTLDVIEDLF LTDLNVENNL FSGPIPPNLL KIPNFKKDGT 240
241 PFNTSIITPP PPPVVDPPPA THRAPPVPRI PPVSGVPPAP FAPFAPLQPQ QHPPPSPPLV 300
301 WSPPSSDNGG GDPWNSVSGQ PTLQISPPSG SGSGKFWSTQ RIILVVSSVA IIVLVSGLCV 360
361 TLWRCC
|
| Detection Method: |  |
| Confidence: | 8.30103 |
| Match: | 2a0zA |
| Description: | The molecular structure of toll-like receptor 3 ligand binding domain |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [367-429] |
1 11 21 31 41 51
| | | | | |
1 RSKIYNRYYS GARKDLQRPY FNKPPSQPTP TMGKVSREPM VKPFDGYGAG DRKYGYPMPQ 60
61 RAE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.429 | a.60.8 | HRDC-like |
| View | Download | 0.409 | a.52.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin |
| View | Download | 0.381 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.381 | a.60.2 | RuvA domain 2-like |
| View | Download | 0.381 | a.159.5 | Description not found. |
| View | Download | 0.380 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.380 | a.144.1 | PABC (PABP) domain |
| View | Download | 0.367 | d.68.7 | R3H domain |
| View | Download | 0.297 | d.52.1 | Alpha-lytic protease prodomain |
| View | Download | 0.295 | a.4.1 | Homeodomain-like |
|
Region A: Residues: [430-768] |
1 11 21 31 41 51
| | | | | |
1 ESRRAMPPTS YYNKDVNTPQ KPLQQPPRQF QSNDTASKRA AHFPPGLNSS SSATVFTIAS 60
61 LQQYTNNFSE ENIIGEGSIG NVYRAELRHG KFLAVKKLSN TINRTQSDGE FLNLVSNVLK 120
121 LKRGHILELL GYCNEFGQRL LVYEYCPNGS LQDALHLDRK LHKKLTWNVR INIALGASKA 180
181 LQFLHEVCQP PVVHQNFKSS KVLLDGKLSV RVADSGLAYM LPPRPTSQMA GYAAPEVEYG 240
241 SYTCQSDVFS LGVVMLELLT GRRPFDRTRP RGHQTLAQWA IPRLHDIDAL TRMVDPSLHG 300
301 AYPMKSLSRF ADIISRSLQM EPGFRPPISE IVQDLQHMI
|
| Detection Method: | |
| Confidence: | 64.30103 |
| Match: | 2qkwB |
| Description: | No description for 2qkwB was found. |
