YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12722082, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12722082, gi|....

Description	E-value	Query Range	Subject Range
gi\|170718665, gi... - gi\|46156876\|ref\|ZP_00131894.2\| COG0084: Mg-dependent DNase [Haemophilus somnus 2336], gi\|170718665\|r...	315.0	[0..1]	[260..1]
gi\|89084133, gi\|... - gi\|89101165\|ref\|ZP_01173998.1\| YabD [Bacillus sp. NRRL B-14911], gi\|89084133\|gb\|EAR63301.1\| YabD [Ba...	313.0	[0..2]	[258..1]
gi\|113461626, gi... - gi\|113461626\|ref\|YP_719695.1\| hypothetical protein HS_1485 [Haemophilus somnus 129PT], gi\|112823669\|...	311.0	[0..5]	[260..2]
gi\|52078534, gi\|... - gi\|52783896\|ref\|YP_089725.1\| YabD [Bacillus licheniformis ATCC 14580], gi\|52346398\|gb\|AAU39032.1\| Ya...	308.0	[0..2]	[258..1]
gi\|145638634, gi... - gi\|145638634\|ref\|ZP_01794243.1\| putative deoxyribonuclease [Haemophilus influenzae PittII], gi\|14527... gi\|144979295, gi... - gi\|145628825\|ref\|ZP_01784625.1\| fused fructose-specific PTS enzymes: IIA component/HPr component [Ha... gi\|53733273 - gi\|53733273\|ref\|ZP_00156289.2\| COG0084: Mg-dependent DNase [Haemophilus influenzae R2866]	305.0	[0..1]	[260..1]
gi\|68057253, gi\|... - gi\|68249054\|ref\|YP_248166.1\| putative deoxyribonuclease [Haemophilus influenzae 86-028NP], gi\|680572...	305.0	[0..1]	[260..1]
gi\|53733022 - gi\|53733022\|ref\|ZP_00155455.2\| COG0084: Mg-dependent DNase [Haemophilus influenzae R2846] gi\|229810633, gi... - gi\|229846540\|ref\|ZP_04466648.1\| putative deoxyribonuclease [Haemophilus influenzae 7P49H1], gi\|22981... gi\|148825266, gi... - gi\|148825266\|ref\|YP_001290019.1\| putative deoxyribonuclease [Haemophilus influenzae PittEE], gi\|1487...	304.0	[0..1]	[260..1]
gi\|126209274, gi... - gi\|126209274\|ref\|YP_001054499.1\| putative Mg-dependent DNAse [Actinobacillus pleuropneumoniae L20], ... gi\|46143620 - gi\|46143620\|ref\|ZP_00134807.2\| COG0084: Mg-dependent DNase [Actinobacillus pleuropneumoniae serovar ...	304.0	[0..1]	[259..4]
YABD_BACSU - Uncharacterized metal-dependent hydrolase YabD OS=Bacillus subtilis (strain 168) GN=yabD PE=3 SV=1 YABD_BACSU - Uncharacterized deoxyribonuclease YabD OS=Bacillus subtilis GN=yabD PE=3 SV=1 gi\|221312170 - gi\|221312170\|ref\|ZP_03593975.1\| hypothetical protein BsubsN3_00195 [Bacillus subtilis subsp. subtili... gi\|221321366 - gi\|221321366\|ref\|ZP_03602660.1\| hypothetical protein BsubsS_00195 [Bacillus subtilis subsp. subtilis... gi\|221317103 - gi\|221317103\|ref\|ZP_03598397.1\| hypothetical protein BsubsJ_00195 [Bacillus subtilis subsp. subtilis...	304.0	[0..2]	[258..1]
gi\|5853057 - gi\|5853057\|gb\|AAD54294.1\| HI0454 [Haemophilus influenzae]	304.0	[0..1]	[260..1]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIVDSHCHL DALDYENLHS SVDDVVNKAM EREVKHLLAV GVTLTRFEQI YATLAKFKNV  60
   61 SLACGVHPLD LDDEPFDADR LLKLADDPKV VAIGETGLDY YYSAENKTTQ QAIFANQIQI 120
  121 ANQLNKPVIV HTRSAREDTI RLLAENHADK CGGVLHCFTE NWDMAKKGLD LGLYISLSGI 180
  181 ITFKNAEEIR DVARRVPLDR LLIETDSPYL APVPYRGKQN QPAYVREVCE YVATLKGVSF 240
  241 EEFAQLTTQN FERLFKINVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.0
Match:	1yixA
Description:	Crystal structure of YCFH, TATD homolog from Escherichia coli K12, at 1.9 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	3.06979421893431	bayes_pls_golite062009
catalytic activity	1.70199291046899	bayes_pls_golite062009
binding	1.06005411409792	bayes_pls_golite062009
nucleic acid binding	0.629962267754185	bayes_pls_golite062009
transcription regulator activity	0.506159010274668	bayes_pls_golite062009
DNA binding	0.462348875991261	bayes_pls_golite062009
deoxyribonuclease activity	0.375250302403787	bayes_pls_golite062009
protein binding	0.0854348074331311	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: