YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15603212, gi\|...
Organism:	Pasteurella multocida subsp. multocida str. Pm70
Length:	241 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15603212, gi|....

Description	E-value	Query Range	Subject Range
gi\|145642264, gi... - gi\|145642264\|ref\|ZP_01797829.1\| DNA-binding transcriptional regulator OxyR [Haemophilus influenzae R... gi\|145638519, gi... - gi\|145638519\|ref\|ZP_01794128.1\| hypothetical protein CGSHiII_07391 [Haemophilus influenzae PittII], ... gi\|145642264, gi... - gi\|145642264\|ref\|ZP_01797829.1\| DNA-binding transcriptional regulator OxyR [Haemophilus influenzae R... gi\|144979425, gi... - gi\|145628955\|ref\|ZP_01784755.1\| DNA-binding transcriptional regulator OxyR [Haemophilus influenzae 2... gi\|42630851 - gi\|42630851\|ref\|ZP_00156390.1\| COG0678: Peroxiredoxin [Haemophilus influenzae R2866] gi\|68057371, gi\|... - gi\|68249172\|ref\|YP_248284.1\| peroxiredoxin/glutaredoxin [Haemophilus influenzae 86-028NP], gi\|680573...	184.0	[0..1]	[241..1]
gi\|46156414, gi\|... - gi\|46156414\|ref\|ZP_00132875.2\| COG0678: Peroxiredoxin [Haemophilus somnus 2336], gi\|170718219\|ref\|YP... gi\|23467482 - gi\|23467482\|ref\|ZP_00123063.1\| COG0678: Peroxiredoxin [Haemophilus somnus 129PT]	184.0	[0..1]	[241..1]
PRX5_HAEIN, Y572... - (P44758) Protein HI0572, Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae GN=HI_0572 PE=1 SV=1 gi\|260581018\|ref... - peroxiredoxin hybrid Prx5 [Haemophilus influenzae RdAW] PRX5_HAEIN - Hybrid peroxiredoxin hyPrx5 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN...	184.0	[0..1]	[241..1]
gi\|38488593 - gi\|38488593\|dbj\|BAD02311.1\| peroxiredoxin like protein [Actinobacillus actinomycetemcomitans]	183.0	[0..1]	[241..12]
gi\|145268872, gi... - gi\|145637932\|ref\|ZP_01793574.1\| DNA-binding transcriptional regulator OxyR [Haemophilus influenzae P... gi\|144985841, gi... - gi\|145633472\|ref\|ZP_01789201.1\| hypothetical protein CGSHi3655_05114 [Haemophilus influenzae 3655], ... gi\|42630019 - gi\|42630019\|ref\|ZP_00155564.1\| COG0678: Peroxiredoxin [Haemophilus influenzae R2846]	183.0	[0..1]	[241..1]
gi\|112822227, gi... - gi\|113460184\|ref\|YP_718241.1\| peroxiredoxin [Haemophilus somnus 129PT], gi\|112822227\|gb\|ABI24316.1\| ...	183.0	[0..6]	[241..3]
gi\|32034501 - gi\|32034501\|ref\|ZP_00134673.1\| COG0678: Peroxiredoxin [Actinobacillus pleuropneumoniae serovar 1 str...	181.0	[0..1]	[241..1]
gi\|33151875, gi\|... - gi\|33151875\|ref\|NP_873228.1\| putative peroxiredoxin/glutaredoxin family protein [Haemophilus ducreyi...	181.0	[0..1]	[241..1]
gi\|91188685, gi\|... - gi\|91227291\|ref\|ZP_01261716.1\| peroxiredoxin family protein/glutaredoxin [Vibrio alginolyticus 12G01...	181.0	[0..4]	[239..5]
gi\|255744397\|ref... - peroxiredoxin family protein/glutaredoxin [Vibrio cholera CIRS 101] gi\|75827887 - gi\|75827887\|ref\|ZP_00757322.1\| COG0678: Peroxiredoxin [Vibrio cholerae O395] tr\|A0A085R3Z6\|A0... - Hybrid peroxiredoxin hyPrx5 OS=Vibrio cholerae GN=DN30_1754 PE=4 SV=1 gi\|75830057, gi\|... - gi\|75830057\|ref\|ZP_00759342.1\| COG0678: Peroxiredoxin [Vibrio cholerae MO10], gi\|116190632\|ref\|ZP_01... gi\|116219574, gi... - gi\|75818991\|ref\|ZP_00749098.1\| COG0678: Peroxiredoxin [Vibrio cholerae V51], gi\|116219574\|ref\|ZP_014... gi\|262158493\|ref... - peroxiredoxin family protein/glutaredoxin [Vibrio cholerae INDRE 91/1] gi\|75822900, gi\|... - gi\|75822900\|ref\|ZP_00752452.1\| COG0678: Peroxiredoxin [Vibrio cholerae RC385], gi\|116216129\|ref\|ZP_0... gi\|75816566 - gi\|75816566\|ref\|ZP_00747032.1\| COG0678: Peroxiredoxin [Vibrio cholerae V52] gi\|262170114\|ref... - peroxiredoxin family protein/glutaredoxin [Vibrio cholerae RC27]	180.0	[0..4]	[237..5]

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Predicted Domain #1

Region A:
Residues: [1-241]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLMEGKKVP QVTFHTRQGD QWVDVTSAEL FDNKTVVLFS LPGAFTPTCS STHLPRYNEL  60
   61 ACEFKALGVD SIICMSVNDT FVMNAWKADQ ECENVIVIPD GNGEFTEGMG MLVGKEDLGF 120
  121 GKRSWRYSML VRNGIVEKMF VEPQEPGDPF KVSDADTMIK YLKPEWQAKP SVSVITKPGC 180
  181 PYCAKAKALL KAKDYTFEEI VLGRDASTIS VRAITGKTSV PQVFIGGKYI GGSEELEKYF 240
  241 A

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.69897
Match:	1nm3A
Description:	C-terminal, Grx domain of Hybrid-Prx5; N-terminal, Prx domain of Hybrid-Prx5
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
antioxidant activity	3.66884588063322	bayes_pls_golite062009
peroxidase activity	3.43831566988273	bayes_pls_golite062009
oxidoreductase activity, acting on peroxide as acceptor	3.43831566988273	bayes_pls_golite062009
glutathione peroxidase activity	2.56524997297011	bayes_pls_golite062009
peroxiredoxin activity	2.12777217096121	bayes_pls_golite062009
thioredoxin peroxidase activity	1.96134566495756	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.8187537496904	bayes_pls_golite062009
protein disulfide oxidoreductase activity	1.47769936616412	bayes_pls_golite062009
disulfide oxidoreductase activity	1.32811008894503	bayes_pls_golite062009
binding	1.25802922431343	bayes_pls_golite062009
selenium binding	1.1082524159827	bayes_pls_golite062009
catalytic activity	0.672192331361968	bayes_pls_golite062009
transcription regulator activity	0.52671047749426	bayes_pls_golite062009
protein binding	0.134341907247724	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: