YRC Public Data Repository - Protein Structure Prediction

Protein:	PSD1_ARATH
Organism:	Arabidopsis thaliana
Length:	453 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD1_ARATH.

Description	E-value	Query Range	Subject Range
PISD_PONPY - Phosphatidylserine decarboxylase proenzyme - Pongo pygmaeus (Orangutan) PISD_PONAB - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Pongo abelii GN=PISD PE=2 SV=1	407.0	[0..18]	[450..9]
gi\|109452016, gi... - gi\|109452016\|emb\|CAK54870.1\| PISD [synthetic construct], gi\|109451420\|emb\|CAK54571.1\| PISD [syntheti... gi\|119580391, gi... - gi\|56417784\|emb\|CAI23032.1\| phosphatidylserine decarboxylase [Homo sapiens], gi\|56202518\|emb\|CAI2244...	405.0	[0..18]	[450..9]
gi\|73995117 - gi\|73995117\|ref\|XP_534739.2\| PREDICTED: similar to Phosphatidylserine decarboxylase proenzyme isofor...	401.0	[0..18]	[450..9]
gi\|92872878 - gi\|92872878\|gb\|ABE81413.1\| Phosphatidylserine decarboxylase [Medicago truncatula]	400.0	[0..1]	[451..1]
PISD_CRIGR - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Cricetulus griseus GN=Pisd PE=1 SV=2	396.0	[0..15]	[450..7]
gi\|109093916 - gi\|109093916\|ref\|XP_001111773.1\| PREDICTED: phosphatidylserine decarboxylase isoform 2 [Macaca mulat...	395.0	[0..20]	[450..11]
PISD_MOUSE - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Mus musculus GN=Pisd PE=2 SV=1	388.0	[0..18]	[450..9]

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Predicted Domain #1

Region A:
Residues: [1-157]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRFPQNVY FLARYSYLRR FQHSQRRTFS SFLNNIRSNY SGARASPLGG SSGAGAGAGG  60
   61 GGTGDSKGNA FLVPGATMAT ILMLGALHAR RLYEDKKIEE KREKGIELEF HPDIKASFLG 120
  121 VLPLRSISRA WGSFMSLEIP VWMRPYAYKA WARAFHS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [158-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLEEAALPLE EYTSLQDFFV RSLKEGCRPI DPDPCCLVSP VDGTVLRFGE LKGNRGMIEQ  60
   61 VKGHSYSVPA LLGNNSLLPM EPEGKNESKE EAVGDKSDKS WLRVSLASPK LRENVSASPM 120
  121 KGLYYCVIYL KPGDYHRIHS PADWNATVRR HFA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [311-453]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRLFPVNERA TRTIRNLYVE NERVVLEGIW KEGFMALAAV GATNIGSIEL FIEPELRTNK  60
   61 PKKKLFPTEP PEERVYDPEG LGLRLEKGKE VAVFNMGSTV VLIFQAPTAN TPEGSSSSSD 120
  121 YRFCVKQGDR VRVGQALGRW KEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.214	N/A	N/A	d.20.1	UBC-like
View	Download	0.207	N/A	N/A	b.8.1	TRAF domain-like
View	Download	0.207	N/A	N/A	b.8.1	TRAF domain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits