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View Structure Prediction Details

Protein: PSD1_ARATH
Organism: Arabidopsis thaliana
Length: 453 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD1_ARATH.

Description E-value Query
Range
Subject
Range
PISD_PONPY - Phosphatidylserine decarboxylase proenzyme - Pongo pygmaeus (Orangutan)
PISD_PONAB - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Pongo abelii GN=PISD PE=2 SV=1
407.0 [0..18] [450..9]
gi|109452016, gi... - gi|109452016|emb|CAK54870.1| PISD [synthetic construct], gi|109451420|emb|CAK54571.1| PISD [syntheti...
gi|119580391, gi... - gi|56417784|emb|CAI23032.1| phosphatidylserine decarboxylase [Homo sapiens], gi|56202518|emb|CAI2244...
405.0 [0..18] [450..9]
gi|73995117 - gi|73995117|ref|XP_534739.2| PREDICTED: similar to Phosphatidylserine decarboxylase proenzyme isofor...
401.0 [0..18] [450..9]
gi|92872878 - gi|92872878|gb|ABE81413.1| Phosphatidylserine decarboxylase [Medicago truncatula]
400.0 [0..1] [451..1]
PISD_CRIGR - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Cricetulus griseus GN=Pisd PE=1 SV=2
396.0 [0..15] [450..7]
gi|109093916 - gi|109093916|ref|XP_001111773.1| PREDICTED: phosphatidylserine decarboxylase isoform 2 [Macaca mulat...
395.0 [0..20] [450..11]
PISD_MOUSE - Phosphatidylserine decarboxylase proenzyme, mitochondrial OS=Mus musculus GN=Pisd PE=2 SV=1
388.0 [0..18] [450..9]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPRFPQNVY FLARYSYLRR FQHSQRRTFS SFLNNIRSNY SGARASPLGG SSGAGAGAGG  60
   61 GGTGDSKGNA FLVPGATMAT ILMLGALHAR RLYEDKKIEE KREKGIELEF HPDIKASFLG 120
  121 VLPLRSISRA WGSFMSLEIP VWMRPYAYKA WARAFHS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [158-310]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NLEEAALPLE EYTSLQDFFV RSLKEGCRPI DPDPCCLVSP VDGTVLRFGE LKGNRGMIEQ  60
   61 VKGHSYSVPA LLGNNSLLPM EPEGKNESKE EAVGDKSDKS WLRVSLASPK LRENVSASPM 120
  121 KGLYYCVIYL KPGDYHRIHS PADWNATVRR HFA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [311-453]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GRLFPVNERA TRTIRNLYVE NERVVLEGIW KEGFMALAAV GATNIGSIEL FIEPELRTNK  60
   61 PKKKLFPTEP PEERVYDPEG LGLRLEKGKE VAVFNMGSTV VLIFQAPTAN TPEGSSSSSD 120
  121 YRFCVKQGDR VRVGQALGRW KEE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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