| Protein: | MED25_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 836 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED25_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
186.0 | [0..376] | [835..90] |
|
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185.0 | [0..376] | [835..91] |
|
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181.0 | [0..376] | [835..90] |
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180.0 | [0..376] | [835..90] |
|
Region A: Residues: [1-206] |
1 11 21 31 41 51
| | | | | |
1 MSSEVKQLIV VAEGTAALGP YWQTIVSDYL EKIIRSFCGS ELNGERNPVS TVELSLVIFN 60
61 SHGSYCACLV QRSGWTRDVD IFLHWLSSIQ FGGGGFNEVA TAEGLAEALM MFSPPSGQAQ 120
121 PSNDLKRHCI LITASNPHIL PTPVYRPRLQ NVERNENGDA QAESRLSDAE TVASYFAKCS 180
181 VSLSVVCPKQ LPTIRALYNA GKPNQQ
|
| Detection Method: |  |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [207-442] |
1 11 21 31 41 51
| | | | | |
1 SADLSIDTAK NTFYLVLISE NFVEACAALS HSATNLPQTQ SPVKVDRATV APSIPVTGQP 60
61 PAPVSSANGP IQNRQPVSVG PVPTATVKVE PSTVTSMAPV PSFPHIPAVA RPATQAIPSI 120
121 QTSSASPVSQ DMVSNAENAP DIKPVVVSGM TPPLRTGPPG GANVNLLNNL SQVRQVMSSA 180
181 ALAGAASSVG QSAVAMHMSN MISTGMATSL PPSQTVFSTG QQGITSMAGS GALMGS
|
| Detection Method: | |
| Confidence: | 3.69897 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [443-554] |
1 11 21 31 41 51
| | | | | |
1 AQTGQSPGPN NAFSPQTTSN VASNLGVSQP MQGMNQGSHS GAMMQGGISM NQNMMSGLGQ 60
61 GNVSSGTGGM MPTPGVGQQA QSGIQQLGGS NSSAPNMQLS QPSSGAMQTS QS
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [555-836] |
1 11 21 31 41 51
| | | | | |
1 KYVKVWEGNL SGQRQGQPVL ITRLEGYRSA SASDSLAANW PPTMQIVRLI SQDHMNNKQY 60
61 VGKADFLVFR AMSQHGFLGQ LQDKKLCAVI QLPSQTLLLS VSDKACRLIG MLFPGDMVVF 120
121 KPQIPNQQQQ QQQQLHQQQQ QQQQIQQQQQ QQQHLQQQQM PQLQQQQQQH QQQQQQQHQL 180
181 SQLQHHQQQQ QQQQQQQQQH QLTQLQHHHQ QQQQASPLNQ MQQQTSPLNQ MQQQTSPLNQ 240
241 MQQQQQPQQM VMGGQAFAQA PGRSQQGGGG GQPNMPGAGF MG
|
| Detection Method: | |
| Confidence: | 14.0 |
| Match: | 1i84S |
| Description: | Heavy meromyosin subfragment |
Matching Structure (courtesy of the PDB): |
|
