YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15805614, gi\|...
Organism:	Deinococcus radiodurans R1
Length:	306 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15805614, gi|....

Description	E-value	Query Range	Subject Range
gi\|19918685, gi\|... - gi\|20093325\|ref\|NP_619400.1\| Mrr restriction system protein [Methanosarcina acetivorans C2A], gi\|199...	6.0E-97	[1..305]	[1..300]
gi\|17233148, gi\|... - gi\|17233148\|ref\|NP_490238.1\| mrr restriction system protein [Nostoc sp. PCC 7120], gi\|17135670\|dbj\|B... gi\|25348829 - pir\|\|AD2494 mrr restriction system protein [imported] - Nostoc sp. (strain PCC 7120) plasmid pCC712...	3.0E-95	[1..305]	[1..304]
gi\|34397031, gi\|... - gi\|34540717\|ref\|NP_905196.1\| Mrr restriction system protein [Porphyromonas gingivalis W83], gi\|34397...	6.0E-95	[3..305]	[2..304]
gi\|21227337, gi\|... - gi\|21227337\|ref\|NP_633259.1\| 5-methylcytosine-specific restriction enzyme [Methanosarcina mazei Go1]...	1.0E-94	[1..305]	[1..303]
gi\|75812373, gi\|... - gi\|75812373\|ref\|YP_319992.1\| restriction endonuclease [Anabaena variabilis ATCC 29413], gi\|75705129\|...	8.0E-94	[1..305]	[1..304]
gi\|73668427, gi\|... - gi\|73668427\|ref\|YP_304442.1\| 5-methylcytosine-specific restriction enzyme [Methanosarcina barkeri st...	2.0E-90	[1..305]	[1..303]
gi\|45599801, gi\|... - gi\|45656566\|ref\|YP_000652.1\| Mrr [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130], g... gi\|24216227, gi\|... - gi\|24216227\|ref\|NP_713708.1\| mrr restriction system protein [Leptospira interrogans serovar Lai str....	8.0E-90	[1..305]	[1..300]
gi\|86608284 - gi\|86608284\|ref\|YP_477046.1\| mrr restriction system protein [Cyanobacteria bacterium Yellowstone B-P... gi\|86608284, gi\|... - gi\|86608284\|ref\|YP_477046.1\| mrr restriction system protein [Synechococcus sp. JA-2-3B'a(2-13)], gi\|...	2.0E-89	[1..305]	[1..307]
gi\|76166883, gi\|... - gi\|76258354\|ref\|ZP_00766010.1\| Restriction endonuclease [Chloroflexus aurantiacus J-10-fl], gi\|76166...	4.0E-88	[1..305]	[9..303]
gi\|88601780, gi\|... - gi\|88601780\|ref\|YP_501958.1\| restriction endonuclease [Methanospirillum hungatei JF-1], gi\|88187242\|...	3.0E-87	[1..305]	[1..303]

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Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVPDFQAFM RPMLEQISSG EPQKIAELYR RLAEFFALTP QDTEELLPSG KQAKYHNRIL  60
   61 WAKFHLDRAG VLTTPSRGVV QITPLGREFL SRYPEHIGMR ELQTIPAYAE FTRRSRSPAQ 120
  121 SPAPAAPPQA ECSASVPPAE QIDALYAELT ANLAEELLAQ VK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.08
Match:	1yg2A
Description:	Structure of the Vibrio cholerae virulence activator AphA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.683379929086364	bayes_pls_golite062009
transcription regulator activity	0.16959343932447	bayes_pls_golite062009
nucleic acid binding	0.0949481158963694	bayes_pls_golite062009
DNA binding	0.00746597740509714	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [163-306]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ELSPAQFERL VVEVLVAMGY GGSVRDAGQA LGRSGDNGID GLIKQDPLGL DRIYLQAKRW  60
   61 KNTVHSPEIR TFSGSLTYHK ATKGVFITTS GFSDGAKATA GQIGNIILLD GETLAHLMIE 120
  121 YGVGVLTRET YQIRRLDADY FEEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.69897
Match:	1y88A
Description:	Hypothetical protein AF1548
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.286388432783973	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions:

Predicted functions: