YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|15610873, gi\|...
Organism:	Mycobacterium tuberculosis H37Rv
Length:	529 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15610873, gi|....

Description	E-value	Query Range	Subject Range
gi\|76782339, gi\|... - gi\|76782339\|ref\|ZP_00769544.1\| COG2966: Uncharacterized conserved protein [Mycobacterium tuberculosi... gi\|124603023, gi... - gi\|81252821\|ref\|ZP_00877397.1\| COG2966: Uncharacterized conserved protein [Mycobacterium tuberculosi... gi\|253322287, gi... - gi\|253800784\|ref\|YP_003033785.1\| hypothetical protein TBMG_03782 [Mycobacterium tuberculosis KZN 143... gi\|254552851 - gi\|254552851\|ref\|ZP_05143298.1\| hypothetical protein Mtube_20801 [Mycobacterium tuberculosis '98-R60... gi\|254818033 - gi\|254818033\|ref\|ZP_05223034.1\| putative transmembrane protein [Mycobacterium tuberculosis KZN 4207] gi\|255094953 - gi\|255094953\|ref\|ZP_05324431.1\| putative transmembrane protein [Mycobacterium tuberculosis KZN 605] gi\|121639653, gi... - gi\|121639653\|ref\|YP_979877.1\| putative transmembrane protein [Mycobacterium bovis BCG str. Pasteur 1... gi\|15843358, gi\|... - gi\|15843358\|ref\|NP_338395.1\| hypothetical protein MT3842 [Mycobacterium tuberculosis CDC1551], gi\|13... gi\|31620507, gi\|... - gi\|31794909\|ref\|NP_857402.1\| transmembrane protein [Mycobacterium bovis AF2122/97], gi\|31620507\|emb\|... gi\|215405792 - gi\|215405792\|ref\|ZP_03417973.1\| transmembrane protein [Mycobacterium tuberculosis 02_1987] gi\|254366282, gi... - gi\|254366282\|ref\|ZP_04982326.1\| conserved transmembrane protein [Mycobacterium tuberculosis str. Haa... gi\|215432718 - gi\|215432718\|ref\|ZP_03430637.1\| transmembrane protein [Mycobacterium tuberculosis EAS054] gi\|215424984 - gi\|215424984\|ref\|ZP_03422903.1\| transmembrane protein [Mycobacterium tuberculosis T92] gi\|219559822 - gi\|219559822\|ref\|ZP_03538898.1\| transmembrane protein [Mycobacterium tuberculosis T17] gi\|215448081 - gi\|215448081\|ref\|ZP_03434833.1\| transmembrane protein [Mycobacterium tuberculosis T85] gi\|224775264, gi... - gi\|224992149\|ref\|YP_002646838.1\| putative transmembrane protein [Mycobacterium bovis BCG str. Tokyo ...	481.0	[0..1]	[529..1]
gi\|76573627 - gi\|76573627\|dbj\|BAE44711.1\| hypothetical protein [Candida albicans] PRM10_CANAW - Pheromone-regulated membrane protein 10 OS=Candida albicans (strain WO-1) GN=CAWG_05545 PE=3 SV=1 PRM10_CANAL - Pheromone-regulated membrane protein 10 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=PRM10...	359.0	[0..24]	[458..651]
gi\|40747961, gi\|... - gi\|67903016\|ref\|XP_681764.1\| hypothetical protein AN8495.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	356.0	[0..15]	[458..375]
gi\|49644343\|emb\|... - unnamed protein product [Kluyveromyces lactis NRRL Y-1140] PRM10_KLULA - Pheromone-regulated membrane protein 10 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 7...	351.0	[0..36]	[458..514]
gi\|70985921, gi\|... - gi\|70985921\|ref\|XP_748465.1\| DUF1212 domain membrane protein [Aspergillus fumigatus Af293], gi\|66846...	345.0	[0..15]	[458..492]
gi\|120406780, gi... - gi\|90204582\|ref\|ZP_01207225.1\| Protein of unknown function DUF1212 [Mycobacterium vanbaalenii PYR-1]...	342.0	[0..1]	[529..1]
gi\|49653492, gi\|... - gi\|50418615\|ref\|XP_457826.1\| hypothetical protein DEHA0C03817g [Debaryomyces hansenii CBS767], gi\|49...	340.0	[0..25]	[458..553]
gi\|45198593, gi\|... - gi\|45198593\|ref\|NP_985622.1\| AFR075Cp [Ashbya gossypii ATCC 10895], gi\|44984544\|gb\|AAS53446.1\| AFR07... PRM10_ASHGO - Pheromone-regulated membrane protein 10 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 99...	338.0	[0..20]	[458..282]
SPAC7D4.12c - DUF1212 family protein YFPC_SCHPO - Uncharacterized UPF0442 protein C7D4.12c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=S...	334.0	[0..37]	[458..318]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDQDRSDNTA LRRGLRIALR GRRDPLPVAG RRSRTSGGID DLHTRKVLDL TIRLAEVMLS  60
   61 SGSGTADVVA TAQDVAQAYQ LTDCVVDITV TTIIVSALAT TDTPPVTIMR SVRTRSTDYS 120
  121 RLAELDRLVQ RITSGGVAVD QAHEAMDELT ERPHPYPRWL ATAGAAGFAL GVAMLLGGTW 180
  181 LTCVLAAVTS GVIDRLGRLL NRIGTPLFFQ RVFGAGIATL VAVAAYLIAG QDPTALVATG 240
  241 IVVLLSGMTL VGSMQDAVTG YMLTALARLG DALFLTAGIV VGILISLRGV TNAGIQIEL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	33.346787
Match:	PF06738.3
Description:	No description for PF06738.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [300-529]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HVDATTTLAT PGMPLPILVA VSGAALSGVC LTIASYAPLR SVATAGLSAG LAELVLIGLG  60
   61 AAGFGRVVAT WTAAIGVGFL ATLISIRRQA PALVTATAGI MPMLPGLAVF RAVFAFAVND 120
  121 TPDGGLTQLL EAAATALALG SGVVLGEFLA SPLRYGAGRI GDLFRIEGPP GLRRAVGRVV 180
  181 RLQPAKSQQP TGTGGQRWRS VALEPTTADD VDAGYRGDWP ATCTSATEVR

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits