YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7477938
Organism:	Mycobacterium tuberculosis
Length:	366 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7477938.

Description	E-value	Query Range	Subject Range
gi\|215410871 - gi\|215410871\|ref\|ZP_03419679.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|215426548 - gi\|215426548\|ref\|ZP_03424467.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|215430118 - gi\|215430118\|ref\|ZP_03428037.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|218752937 - gi\|218752937\|ref\|ZP_03531733.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|219557130 - gi\|219557130\|ref\|ZP_03536206.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|224989643, gi... - gi\|224989643\|ref\|YP_002644330.1\| putative magnesium and cobalt transport transmembrane protein [Myco... gi\|253799716, gi... - gi\|253799716\|ref\|YP_003032717.1\| hypothetical protein TBMG_02742 [Mycobacterium tuberculosis KZN 143... gi\|254550245 - gi\|254550245\|ref\|ZP_05140692.1\| hypothetical protein Mtube_07264 [Mycobacterium tuberculosis '98-R60... gi\|254815041 - gi\|254815041\|ref\|ZP_05220042.1\| putative magnesium and cobalt transport transmembrane protein [Mycob... gi\|255096019 - gi\|255096019\|ref\|ZP_05325497.1\| putative magnesium and cobalt transport transmembrane protein [Mycob... gi\|15840684, gi\|... - gi\|15840684\|ref\|NP_335721.1\| CorA family transport protein [Mycobacterium tuberculosis CDC1551], gi\|... gi\|121492815, gi... - gi\|121637168\|ref\|YP_977391.1\| putative magnesium and cobalt transport transmembrane protein corA [My... gi\|215403078 - gi\|215403078\|ref\|ZP_03415259.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte... gi\|76784947, gi\|... - gi\|76784947\|ref\|ZP_00772124.1\| COG0598: Mg2+ and Co2+ transporters [Mycobacterium tuberculosis F11],... gi\|81254856, gi\|... - gi\|81254856\|ref\|ZP_00879359.1\| COG0598: Mg2+ and Co2+ transporters [Mycobacterium tuberculosis C], g... gi\|134149653, gi... - gi\|254364139\|ref\|ZP_04980185.1\| magnesium and cobalt transport transmembrane protein corA [Mycobacte...	346.0	[0..1]	[366..1]
gi\|31792432, gi\|... - gi\|31792432\|ref\|NP_854925.1\| magnesium/cobalt transporter CorA [Mycobacterium bovis AF2122/97], gi\|3...	346.0	[0..1]	[366..1]
gi\|11277049, gi\|... - gi\|699153\|gb\|AAA62919.1\| corA [Mycobacterium leprae], pir\|\|T45205 divalent cation transport protein ...	328.0	[0..1]	[366..5]
gi\|15827535 - gi\|15827535\|ref\|NP_301798.1\| membrane transporter [Mycobacterium leprae TN] gi\|25295827, gi\|... - pir\|\|D87045 probable membrane transport protein ML1090 [imported] - Mycobacterium leprae, gi\|1309308... gi\|221230012, gi... - gi\|221230012\|ref\|YP_002503428.1\| putative membrane transport protein [Mycobacterium leprae Br4923], ...	328.0	[0..1]	[366..1]
gi\|89343035, gi\|... - gi\|89343035\|ref\|ZP_01195265.1\| Magnesium and cobalt transport protein CorA [Mycobacterium flavescens...	307.0	[0..3]	[366..2]
gi\|41396998, gi\|... - gi\|41408640\|ref\|NP_961476.1\| hypothetical protein MAP2542 [Mycobacterium avium subsp. paratuberculos... gi\|254774258 - gi\|254774258\|ref\|ZP_05215774.1\| hypothetical protein MaviaA2_06255 [Mycobacterium avium subsp. avium...	305.0	[0..1]	[366..1]
gi\|120405434, gi... - gi\|90205966\|ref\|ZP_01208603.1\| Magnesium and cobalt transport protein CorA [Mycobacterium vanbaaleni...	294.0	[0..3]	[366..2]
gi\|111022960, gi... - gi\|111022960\|ref\|YP_705932.1\| Mg2+/Co2+ transporter [Rhodococcus jostii RHA1], gi\|110822490\|gb\|ABG97...	294.0	[0..3]	[366..2]
gi\|221564892, gi... - gi\|222055603\|ref\|YP_002537965.1\| magnesium and cobalt transport protein CorA [Geobacter sp. FRC-32],...	292.0	[0..22]	[366..7]
gi\|9714442, gi\|2... - gi\|9714442\|emb\|CAC01358.1\| putative metal-transport protein [Streptomyces coelicolor A3(2)], gi\|2122...	289.0	[0..12]	[366..7]

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Predicted Domain #1

Region A:
Residues: [1-366]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFPGFDALPE VLRPVARPQP PNAHPVAQPP AQALVDCGVY VCGQRLPGKY TYAAALREVR  60
   61 EIELTGQEAF VWIGLHEPDE NQMQDVADVF GLHPLAVEDA VHAHQRPKLE RYDETLFLVL 120
  121 KTVNYVPHES VVLAREIVKT GEIMIFVGKD FVVTVRHGEH GGLSEVRKRM DADPEHLRLG 180
  181 PYAVMHAIAD YVVDHYLEVT NLMETDIDSI EEVAFAPGRK LDIEPIYLLK REVVELRRCV 240
  241 NPLSTAFQRM QTESKDLISK EVRRYLRDVA DHQTEAADQI ASYDDMLNSL VQAALARVGM 300
  301 QQNMDMRKIS AWAGIIAVPT MIAGIYGMNF HFMPELDSRW GYPTVIGGMV LICLFLYHVF 360
  361 RNRNWL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.045757
Match:	2iubA
Description:	No description for 2iubA was found.

Predicted functions:

Term	Confidence	Notes
magnesium ion transmembrane transporter activity	7.63785586121898	bayes_pls_golite062009
cobalt ion transmembrane transporter activity	7.48429812485343	bayes_pls_golite062009
transition metal ion transmembrane transporter activity	5.47408292962243	bayes_pls_golite062009
metal ion transmembrane transporter activity	4.27993916398035	bayes_pls_golite062009
di-, tri-valent inorganic cation transmembrane transporter activity	4.02949149198783	bayes_pls_golite062009
cation transmembrane transporter activity	3.9353435026882	bayes_pls_golite062009
ion transmembrane transporter activity	3.87152688974328	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	3.60691302970128	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	3.57322088679472	bayes_pls_golite062009
transporter activity	2.16348856338652	bayes_pls_golite062009
transmembrane transporter activity	2.04530161484383	bayes_pls_golite062009
substrate-specific transporter activity	1.79472790754975	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: