YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|11348354
Organism:	Pseudomonas aeruginosa
Length:	394 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|11348354.

Description	E-value	Query Range	Subject Range
gi\|77385889, gi\|... - gi\|77461886\|ref\|YP_351393.1\| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas fluorescens ...	1.0E-91	[1..393]	[1..393]
FAMT_PSEPU - Probable fatty acid methyltransferase OS=Pseudomonas putida PE=3 SV=1	4.0E-90	[1..393]	[1..393]
gi\|26992041, gi\|... - gi\|26992041\|ref\|NP_747466.1\| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas putida KT244...	4.0E-90	[1..393]	[35..427]
gi\|28379564, gi\|... - gi\|28379564\|ref\|NP_786456.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus plantarum ...	6.0E-90	[3..394]	[8..390]
gi\|95113399, gi\|... - gi\|95113399\|emb\|CAK18127.1\| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas entomophila L... gi\|95113399 - gi\|95113399\|emb\|CAK18127.1\| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas entomophila L...	8.0E-90	[1..393]	[1..393]
gi\|42519375, gi\|... - gi\|42519375\|ref\|NP_965305.1\| hypothetical protein LJ1503 [Lactobacillus johnsonii NCC 533], gi\|41583...	9.0E-90	[1..392]	[6..389]
gi\|82736565, gi\|... - gi\|82736565\|ref\|ZP_00899422.1\| cyclopropane-fatty-acyl-phospholipid synthase, putative [Pseudomonas ...	3.0E-89	[1..393]	[1..393]
gi\|90961926, gi\|... - gi\|90961926\|ref\|YP_535842.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus salivarius...	3.0E-89	[1..393]	[6..389]
gi\|71555977, gi\|... - gi\|71735424\|ref\|YP_277239.1\| cyclopropane-fatty-acyl-phospholipid synthase [Pseudomonas syringae pv....	6.0E-89	[1..394]	[1..395]
gi\|115588918, gi... - gi\|116053697\|ref\|YP_794024.1\| hypothetical protein PA14_73140 [Pseudomonas aeruginosa UCBPP-PA14], g...	6.0E-89	[1..394]	[1..394]

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Predicted Domain #1

Region A:
Residues: [1-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIAQLPSELL SLQLPLRIRI GDAQAFDLGP DPQVTMVIRD PSLLTEITHP SLDALGKAYV  60
   61 EKRLDIEGPI SQVIGIGDAL SEALGEPDGG APPVRESHDK DTDAEAIHYH YDLSNDFYQL 120
  121 WLDPEMVYSC AYFETGKEDL ATAQLAKLRH LCRKLRLQPG EKLLDVGCGW GGLARLAARE 180
  181 FGVEVTGITL SKEQLALGRE RVKAEGLEDR VTLKLLDYRD LPRDGRFDKV VSVGMFEHVG 240
  241 HANLGLYFQQ LYEAVRPGGL VMNHGITSRY TDGRPVGKGA GDFIDRYVFP HGELPHLSLA 300
  301 VARMSEAGLE VVDVESLRL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.522879
Match:	1tw2A
Description:	Crystal structure of Carminomycin-4-O-methyltransferase (DnrK) in complex with S-adenosyl-L-homocystein (SAH) and 4-methoxy-e-rhodomycin T (M-ET)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.535429947810431	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [320-394]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HYARTLDFWS ANLEARLKEA ARLVPEETLR IWRLYLAGCA YGFKRGWINL HQILAIRPHE  60
   61 DGSHELPWSR RDLYA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	53.0
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: