YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9950558, gi\|1...
Organism:	Pseudomonas aeruginosa PAO1
Length:	507 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9950558, gi|1....

Description	E-value	Query Range	Subject Range
gi\|77460673, gi\|... - gi\|77460673\|ref\|YP_350180.1\| fumarase [Pseudomonas fluorescens Pf0-1], gi\|77384676\|gb\|ABA76189.1\| pu...	0.0	[1..507]	[1..507]
gi\|70732126, gi\|... - gi\|70732126\|ref\|YP_261882.1\| fumarate hydratase, class I, putative [Pseudomonas fluorescens Pf-5], g...	0.0	[1..507]	[1..507]
gi\|23105040 - ref\|ZP_00091498.1\| COG1951: Tartrate dehydratase alpha subunit/Fumarate hydratase class I, N-termina... gi\|67086112, gi\|... - gi\|67156353\|ref\|ZP_00417946.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	0.0	[1..505]	[1..505]
gi\|94413998, gi\|... - gi\|94413998\|ref\|ZP_01293867.1\| hypothetical protein PaerP_01004268 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[1..507]	[1..507]
gi\|107100084 - gi\|107100084\|ref\|ZP_01364002.1\| hypothetical protein PaerPA_01001105 [Pseudomonas aeruginosa PACS2]	0.0	[1..507]	[1..507]
gi\|66047258, gi\|... - gi\|66047258\|ref\|YP_237099.1\| Fe-S type hydro-lyase tartrate/fumarate alpha region:Fe-S type hydro-ly...	0.0	[1..507]	[1..507]
gi\|28854727, gi\|... - gi\|28871476\|ref\|NP_794095.1\| fumarate hydratase, class I, putative [Pseudomonas syringae pv. tomato ... gi\|213970291, gi... - gi\|213970291\|ref\|ZP_03398421.1\| fumarate hydratase, class I [Pseudomonas syringae pv. tomato T1], gi... tr\|Q87X49\|Q87X49... - Fumarate hydratase, class I, putative OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=PSPTO_43...	0.0	[1..507]	[1..507]
gi\|104780356, gi... - gi\|95109343\|emb\|CAK14043.1\| putative fumarate hydratase, class I [Pseudomonas entomophila L48], gi\|1... gi\|95109343 - gi\|95109343\|emb\|CAK14043.1\| putative fumarate hydratase, class I [Pseudomonas entomophila L48]	0.0	[1..507]	[1..507]
gi\|24982314, gi\|... - gi\|26987633\|ref\|NP_743058.1\| hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit [Pse... tr\|E4R5N0\|E4R5N0... - Hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit OS=Pseudomonas putida (strain BIR... tr\|I7AYG2\|I7AYG2... - Hydro-lyase, Fe-S type, tartrate/fumarate OS=Pseudomonas putida (strain DOT-T1E) GN=fumA PE=4 SV=1	0.0	[1..507]	[1..507]
gi\|148546179, gi... - gi\|82736029\|ref\|ZP_00898890.1\| Fe-S type hydro-lyases tartrate/fumarate alpha region:Fe-S type hydro...	0.0	[1..507]	[1..507]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIKQDDLI QSVADALQFI SYYHPVDFIQ AMHEAYLREE SPAARDSMAQ ILINSRMCAT  60
   61 GHRPICQDTG IVTVFVRVGM DVRWDGATMS VDDMINEGVR RAYN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [105-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LPENVLRASI LADPAGARKN TKDNTPAVIH YSIVPGDKVE VDVAAKGGGS ENKSKMAMLN  60
   61 PSDSIVDWVL KTVPTMGAGW CPPGMLGIGI GGTAEKAAVM AKEVLMDPID IHELKARGPQ 120
  121 NRIEELRLEL FEKVNQLGIG AQGLGGLTTV LDVKIMDYPT HAASLPVCMI PNCAATRHAH 180
  181 FVLDGSGPAE LEAPSLD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [302-507]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AYPEIVWEAG PSARRVDLDK ITPEEVQSWK PGETLLLNGK MLTGRDAAHK RMVDMLNKGE  60
   61 TLPVDLKGRF IYYVGPVDPV GDEVVGPAGP TTATRMDKFT RQILEQTGLL GMIGKSERGP 120
  121 IAIEAIKDNK AVYLMAVGGA AYLVAQAIKK SKVLAFAELG MEAIYEFEVK DMPVTVAVDT 180
  181 NGESVHITGP AVWQKKIAES LAVEVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.154902
Match:	2isbA
Description:	No description for 2isbA was found.

Predicted functions:

Term	Confidence	Notes
fumarate hydratase activity	4.30776362388359	bayes_pls_golite062009
catalytic activity	1.39167388925	bayes_pls_golite062009
hydro-lyase activity	1.11577769148523	bayes_pls_golite062009
carbon-oxygen lyase activity	0.94294096501279	bayes_pls_golite062009
lyase activity	0.249976345730856	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: