YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|46164624, gi\|...
Organism:	Pseudomonas aeruginosa UCBPP-PA14
Length:	209 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|46164624, gi|....

Description	E-value	Query Range	Subject Range
gi\|226942951, gi... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], gi\|67085087\|gb\|EAM04563.1... gi\|53610053, gi\|... - gi\|67157818\|ref\|ZP_00418963.1\| Flavoprotein [Azotobacter vinelandii AvOP], ref\|ZP_00088579.2\| COG016...	5.0E-65	[1..209]	[1..209]
gi\|49079190 - gi\|49079190\|gb\|AAT49864.1\| PA4019 [synthetic construct]	3.0E-64	[1..209]	[1..209]
gi\|152985350, gi... - gi\|94417048\|ref\|ZP_01296870.1\| hypothetical protein PaerP_01001244 [Pseudomonas aeruginosa PA7], gi\|...	5.0E-63	[1..209]	[1..209]
gi\|70732771, gi\|... - gi\|70732771\|ref\|YP_262534.1\| aromatic acid decarboxylase [Pseudomonas fluorescens Pf-5], gi\|68347070...	1.0E-62	[1..209]	[1..210]
gi\|77461207, gi\|... - gi\|77461207\|ref\|YP_350714.1\| aromatic acid decarboxylase [Pseudomonas fluorescens Pf0-1], gi\|7738521...	3.0E-62	[4..209]	[6..211]
gi\|229341199, gi... - gi\|229521605\|ref\|ZP_04411023.1\| 3-polyprenyl-4-hydroxybenzoate carboxy-lyase UbiX [Vibrio cholerae T... tr\|A0A085RTE9\|A0... - Polyprenyl P-hydroxybenzoate and phenylacrylic acid decarboxylase family protein OS=Vibrio cholerae ... gi\|116220720, gi... - gi\|75820167\|ref\|ZP_00750221.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	3.0E-62	[1..209]	[1..209]
gi\|71556457, gi\|... - gi\|71735904\|ref\|YP_276769.1\| aromatic acid decarboxylase [Pseudomonas syringae pv. phaseolicola 1448...	3.0E-62	[1..209]	[1..209]
gi\|116216911, gi... - gi\|75822781\|ref\|ZP_00752347.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	3.0E-62	[1..209]	[1..209]
gi\|116189430, gi... - gi\|75830527\|ref\|ZP_00759803.1\| COG0163: 3-polyprenyl-4-hydroxybenzoate decarboxylase [Vibrio cholera...	4.0E-62	[1..209]	[1..209]
gi\|26987286, gi\|... - gi\|26987286\|ref\|NP_742711.1\| aromatic acid decarboxylase [Pseudomonas putida KT2440], gi\|24981931\|gb... gi\|148545837, gi... - gi\|82736960\|ref\|ZP_00899814.1\| Phenylacrylic acid decarboxylase [Pseudomonas putida F1], gi\|82716004... tr\|E4RFW6\|E4RFW6... - UbiD OS=Pseudomonas putida (strain BIRD-1) GN=ubiD PE=4 SV=1 tr\|I7B7R6\|I7B7R6... - Aromatic acid decarboxylase OS=Pseudomonas putida (strain DOT-T1E) GN=T1E_1538 PE=4 SV=1	4.0E-62	[1..209]	[1..209]

Back

Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGPERITLA MTGASGAQYG LRLLDCLVQE EREVHFLISK AAQLVMATET DVALPAKPQA  60
   61 MQAFLTEYCG AAAGQIRVFG QNDWMAPPAS GSSAPNAMVI CPCSTGTLSA VATGACNNLI 120
  121 ERAADVALKE RRPLVLVPRE APFSSIHLEN MLKLSNLGAV ILPAAPGFYH QPQSVEDLVD 180
  181 FVVARILNTL GIPQDMLPRW GEQHLVSDE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.39794
Match:	1sbzA
Description:	Crystal Structure of dodecameric FMN-dependent Ubix-like Decarboxylase from Escherichia coli O157:H7
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity	5.88631349530005	bayes_pls_golite062009
carboxy-lyase activity	2.27469953971238	bayes_pls_golite062009
catalytic activity	1.88716391063227	bayes_pls_golite062009
carbon-carbon lyase activity	1.67751595868044	bayes_pls_golite062009
phosphopantothenoylcysteine decarboxylase activity	1.6488492075417	bayes_pls_golite062009
lyase activity	0.646446561158526	bayes_pls_golite062009
phosphopantothenate--cysteine ligase activity	0.35505046579356	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: