YRC Public Data Repository - Protein Structure Prediction

Protein:	lcl\|NC_016856.1_...
Organism:	Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for lcl|NC_016856.1_....

Description	E-value	Query Range	Subject Range
gi\|224354 - gi\|224354\|prf\|\|1102210A protein gpt	2.0E-33	[1..152]	[1..152]
XGPT_MANSM - Xanthine phosphoribosyltransferase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=gpt PE=3 SV=...	3.0E-30	[1..152]	[1..152]
XGPT_PECAS - Xanthine phosphoribosyltransferase OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC BAA-672) ... XGPT_ERWCT - Xanthine phosphoribosyltransferase OS=Erwinia carotovora subsp. atroseptica GN=gpt PE=3 SV=1	7.0E-30	[1..152]	[1..152]
XGPT_ECOL5 - Xanthine phosphoribosyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=gpt PE=3 SV... XGPT_ECOL6 - Xanthine phosphoribosyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN... XGPT_ECOL6 - Xanthine phosphoribosyltransferase OS=Escherichia coli O6 GN=gpt PE=3 SV=1 XGPT_ECO27 - Xanthine phosphoribosyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gpt PE=3 ... sp\|B7UJC6\|XGPT_ECO27 - Xanthine phosphoribosyltransferase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=gpt PE=3 ... gi\|191171457, gi... - gi\|75241690\|ref\|ZP_00725527.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|227884746, gi... - gi\|227884746\|ref\|ZP_04002551.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli 83972],... XGPT_ECO81 - Xanthine phosphoribosyltransferase OS=Escherichia coli O81 (strain ED1a) GN=gpt PE=3 SV=1	8.0E-30	[1..152]	[1..152]
gi\|4902973, gi\|8... - gi\|89107111\|ref\|AP_000891.1\| guanine-hypoxanthine phosphoribosyltransferase [Escherichia coli str. K... gi\|13359722, gi\|... - gi\|15829519\|ref\|NP_308292.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli O157:H7 st... XGPT_SHIF8 - Xanthine phosphoribosyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=gpt PE=3 SV=1 XGPT_ECOBW - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=gpt PE=3 SV... gi\|242376068, gi... - gi\|251783795\|ref\|YP_002998099.1\| hypothetical protein B21_00236 [Escherichia coli BL21], gi\|24237606... XGPT_SHISS - Xanthine phosphoribosyltransferase OS=Shigella sonnei (strain Ss046) GN=gpt PE=3 SV=1 gi\|253774737, gi... - gi\|254287155\|ref\|YP_003052903.1\| xanthine phosphoribosyltransferase [Escherichia coli BL21(DE3)], gi... XGPT_DESVH - (Q72D63) Xanthine phosphoribosyltransferase (EC 2.4.2.22) (Xanthine-guanine phosphoribosyltransferas... XGPT_ECOLC - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=gpt... XGPT_SHIFL - Xanthine phosphoribosyltransferase OS=Shigella flexneri GN=gpt PE=3 SV=1 gi\|189355753, gi... - gi\|189355753\|gb\|EDU74172.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4401... gi\|595749, gi\|20... - gi\|595753\|gb\|AAC53601.1\| xanthine-guanine phosphoribosyl transferase [unidentified cloning vector], ... gi\|168750222, gi... - gi\|188015561\|gb\|EDU53683.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4113... EG10414 - xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase / Xanthine phosphorib... gi\|5640089 - gi\|5640089\|emb\|CAB51567.1\| Xanthine-guanine phosphoribosyl transferase [Expression vector pCDPT] gi\|189361073, gi... - gi\|189361073\|gb\|EDU79492.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4486... gi\|24111728, gi\|... - gi\|24111728\|ref\|NP_706238.1\| xanthine-guanine phosphoribosyltransferase [Shigella flexneri 2a str. 3... gi\|189366391, gi... - gi\|189366391\|gb\|EDU84807.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4501... gi\|30040099, gi\|... - gi\|30061855\|ref\|NP_836026.1\| xanthine-guanine phosphoribosyltransferase [Shigella flexneri 2a str. 2... XGPT_ECO57 - Xanthine phosphoribosyltransferase OS=Escherichia coli O157:H7 GN=gpt PE=3 SV=1 EG10414 - xanthine phosphoribosyltransferase; xanthine-guanine phosphoribosyltransferase / Xanthine phosphorib... gi\|12513012, gi\|... - gi\|15799943\|ref\|NP_285955.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli O157:H7 ED... gi\|208819170, gi... - gi\|208819170\|ref\|ZP_03259490.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC... gi\|208814068, gi... - gi\|208814068\|ref\|ZP_03255397.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC... XGPT_ECOSE - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain SE11) GN=gpt PE=3 SV=1 XGPT_ECO5E - Xanthine phosphoribosyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=gpt PE=3 SV... XGPT_ECO8A - Xanthine phosphoribosyltransferase OS=Escherichia coli O8 (strain IAI1) GN=gpt PE=3 SV=1 gi\|217325220, gi... - gi\|217325220\|ref\|ZP_03441304.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. TW... XGPT_ECOLU - Xanthine phosphoribosyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=gpt PE... XGPT_ECO55 - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain 55989 / EAEC) GN=gpt PE=3 SV=1 XGPT_SHIDS - Xanthine phosphoribosyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=gpt PE=3 SV=... gi\|124501708, gi... - gi\|124526652\|ref\|ZP_01698561.1\| Xanthine phosphoribosyltransferase [Escherichia coli B], gi\|12450170... gi\|188999614, gi... - gi\|188999614\|gb\|EDU68600.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4076... XGPT_SHIBS - Xanthine phosphoribosyltransferase OS=Shigella boydii serotype 4 (strain Sb227) GN=gpt PE=3 SV=1 gi\|187768393, gi... - gi\|187768393\|gb\|EDU32237.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC4196... gi\|75258759, gi\|... - gi\|75258759\|ref\|ZP_00730149.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|189377305, gi... - gi\|189377305\|gb\|EDU95721.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC508]... gi\|188493402, gi... - gi\|75513576\|ref\|ZP_00735967.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|168789711, gi... - gi\|189370733\|gb\|EDU89149.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC869]... XGPT_ECOSM - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=gpt PE=3 SV=1 XGPT_ECODH - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain K12 / DH10B) GN=gpt PE=3 SV=1 gi\|208726936, gi... - gi\|208807135\|ref\|ZP_03249472.1\| xanthine phosphoribosyltransferase [Escherichia coli O157:H7 str. EC... gi\|195938641 - gi\|195938641\|ref\|ZP_03084023.1\| xanthine-guanine phosphoribosyltransferase [Escherichia coli O157:H7... gi\|83586314, gi\|... - gi\|83586314\|ref\|ZP_00924949.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|253972253, gi... - gi\|254160352\|ref\|YP_003043460.1\| xanthine phosphoribosyltransferase [Escherichia coli B str. REL606]... XGPT_ECO24 - Xanthine phosphoribosyltransferase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=gpt PE=3 ... gi\|254791398, gi... - gi\|254791398\|ref\|YP_003076235.1\| guanine-xanthine phosphoribosyltransferase [Escherichia coli O157:H... gi\|83570394, gi\|... - gi\|83570394\|ref\|ZP_00921839.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|190904225, gi... - gi\|75231162\|ref\|ZP_00717584.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... gi\|192958021, gi... - gi\|75237304\|ref\|ZP_00721351.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-... XGPT_ECOHS - Xanthine phosphoribosyltransferase OS=Escherichia coli O9:H4 (strain HS) GN=gpt PE=3 SV=1 XGPT_ECOLI - Xanthine phosphoribosyltransferase (EC 2.4.2.22) (Xanthine-guanine phosphoribosyltransferase) (XGPRT... gi\|194427540, gi... - gi\|75211194\|ref\|ZP_00711301.1\| COG0503: Adenine/guanine phosphoribosyltransferases and related PRPP-...	1.0E-29	[1..152]	[1..152]
XGPT_ECOUT - Xanthine phosphoribosyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=gpt PE=3 SV=1 gi\|226898953, gi... - gi\|237707743\|ref\|ZP_04538224.1\| xanthine-guanine phosphoribosyltransferase [Escherichia sp. 3_2_53FA... XGPT_ECO45 - Xanthine phosphoribosyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=gpt PE=3 SV=1 XGPT_ECOK1 - Xanthine phosphoribosyltransferase OS=Escherichia coli O1:K1 / APEC GN=gpt PE=3 SV=1	1.0E-29	[1..152]	[1..152]
XGPT_SHIB3 - Xanthine phosphoribosyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=gp...	1.0E-29	[1..152]	[1..152]
XGPT_ACTSZ - Xanthine phosphoribosyltransferase OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=gpt ...	2.0E-29	[1..152]	[1..152]
gi\|90579862, gi\|... - gi\|90579862\|ref\|ZP_01235670.1\| xanthine phosphoribosyltransferase [Vibrio angustum S14], gi\|90438747...	2.0E-29	[1..152]	[1..152]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEKYVVTWD MLQIHARKLA SRLMPSEQWK GIIAVSRGGL VPGALLAREL GIRHVDTVCI  60
   61 SSYDHDNQRE LKVLKRAEGD GEGFIVIDDL VDTGGTAVAI REMYPKAHFV TIFAKPAGRP 120
  121 LVDDYVIDIP QNTWIEQPWD MGVVFVPPIS GR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	1a95A
Description:	Xantine-guanine PRTase (XPRTase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
adenine phosphoribosyltransferase activity	4.07252508868782	bayes_pls_golite062009
transferase activity, transferring glycosyl groups	3.91023158228049	bayes_pls_golite062009
hypoxanthine phosphoribosyltransferase activity	3.89356447922614	bayes_pls_golite062009
transferase activity	2.73727660668741	bayes_pls_golite062009
transferase activity, transferring pentosyl groups	2.53679639481311	bayes_pls_golite062009
catalytic activity	2.30431811394775	bayes_pls_golite062009
uracil phosphoribosyltransferase activity	2.20660111782431	bayes_pls_golite062009
amidophosphoribosyltransferase activity	1.51802880667162	bayes_pls_golite062009
purine binding	1.3774977535406	bayes_pls_golite062009
nucleobase binding	1.28671115202467	bayes_pls_golite062009
ribose phosphate diphosphokinase activity	1.18255665419929	bayes_pls_golite062009
diphosphotransferase activity	0.882962388159961	bayes_pls_golite062009
xanthine phosphoribosyltransferase activity	0.607713614998293	bayes_pls_golite062009
orotate phosphoribosyltransferase activity	0.148898393751978	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: