YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49613720, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49613720, gi|....

Description	E-value	Query Range	Subject Range
gi\|167054296, gi... - gi\|167426693\|ref\|ZP_02318446.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis biovar Mediaev... gi\|167468157 - gi\|167468157\|ref\|ZP_02332861.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis FV-1] gi\|186699669, gi... - gi\|186896643\|ref\|YP_001873755.1\| N-carbamoylputrescine amidase [Yersinia pseudotuberculosis PB1/+], ... gi\|25320756 - pir\|\|AB0115 probable carbon-nitrogen hydrolase YPO0938 [imported] - Yersinia pestis (strain CO92) gi\|145597884, gi... - gi\|145597884\|ref\|YP_001161960.1\| carbon-nitrogen hydrolase [Yersinia pestis Pestoides F], gi\|1452095... gi\|229704318, gi... - gi\|229837630\|ref\|ZP_04457792.1\| putative carbon-nitrogen hydrolase [Yersinia pestis Pestoides A], gi... gi\|229697223, gi... - gi\|229840857\|ref\|ZP_04461016.1\| putative carbon-nitrogen hydrolase [Yersinia pestis biovar Orientali... gi\|45438110, gi\|... - gi\|45443242\|ref\|NP_994781.1\| putative carbon-nitrogen hydrolase [Yersinia pestis biovar Microtus str... gi\|165914768, gi... - gi\|89104341\|ref\|ZP_01176887.1\| COG0388: Predicted amidohydrolase [Yersinia pestis biovar Orientalis ... gi\|162420690, gi... - gi\|162420690\|ref\|YP_001607682.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis Angola], gi\|1... gi\|229690893, gi... - gi\|229842583\|ref\|ZP_04462738.1\| putative carbon-nitrogen hydrolase [Yersinia pestis biovar Orientali... gi\|21960266, gi\|... - gi\|22127200\|ref\|NP_670623.1\| hypothetical protein y3324 [Yersinia pestis KIM], gi\|21960266\|gb\|AAM868... gi\|108806324, gi... - gi\|108806324\|ref\|YP_650240.1\| putative carbon-nitrogen hydrolase [Yersinia pestis Antiqua], gi\|10877... gi\|165923274, gi... - gi\|165925074\|ref\|ZP_02220906.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis biovar Orienta... gi\|16121242, gi\|... - gi\|218928110\|ref\|YP_002345985.1\| putative carbon-nitrogen hydrolase [Yersinia pestis CO92], gi\|16121... gi\|117672589, gi... - gi\|77630186\|ref\|ZP_00792772.1\| COG0388: Predicted amidohydrolase [Yersinia pseudotuberculosis IP 317... gi\|166010293, gi... - gi\|166010293\|ref\|ZP_02231191.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis biovar Antiqua... gi\|51597520, gi\|... - gi\|51597520\|ref\|YP_071711.1\| putative carbon-nitrogen hydrolase [Yersinia pseudotuberculosis IP 3295... gi\|166212796, gi... - gi\|166212796\|ref\|ZP_02238831.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis biovar Antiqua... gi\|167400098, gi... - gi\|167400098\|ref\|ZP_02305616.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis biovar Antiqua... gi\|166960099, gi... - gi\|167421962\|ref\|ZP_02313715.1\| N-carbamoylputrescine amidohydrolase [Yersinia pestis biovar Orienta... gi\|108813295, gi... - gi\|229903758\|ref\|ZP_04518871.1\| putative carbon-nitrogen hydrolase [Yersinia pestis Nepal516], gi\|22... gi\|149290667, gi... - gi\|149367053\|ref\|ZP_01889086.1\| putative carbon-nitrogen hydrolase [Yersinia pestis CA88-4125], gi\|1... Q666N8\|Q666N8_YERPS - Putative carbon-nitrogen hydrolase - Yersinia pseudotuberculosis	298.0	[0..1]	[294..1]
gi\|77961496, gi\|... - gi\|77961496\|ref\|ZP_00825332.1\| COG0388: Predicted amidohydrolase [Yersinia mollaretii ATCC 43969], g...	298.0	[0..1]	[294..1]
gi\|77974463, gi\|... - gi\|77974463\|ref\|ZP_00830003.1\| COG0388: Predicted amidohydrolase [Yersinia frederiksenii ATCC 33641]...	297.0	[0..1]	[294..1]
gi\|77976498, gi\|... - gi\|77976498\|ref\|ZP_00831984.1\| COG0388: Predicted amidohydrolase [Yersinia intermedia ATCC 29909], g...	297.0	[0..1]	[294..1]
gi\|82723767, gi\|... - gi\|82748375\|ref\|ZP_00910860.1\| probable hydratase [Clostridium beijerincki NCIMB 8052], gi\|82723767\|...	289.0	[0..1]	[290..1]
gi\|77382601, gi\|... - gi\|77458598\|ref\|YP_348103.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pseud...	286.0	[0..1]	[291..1]
gi\|91223883, gi\|... - gi\|91223883\|ref\|ZP_01259147.1\| putative carbon-nitrogen hydrolase [Vibrio alginolyticus 12G01], gi\|9...	283.0	[0..1]	[290..1]
gi\|28806766 - gi\|28806766\|dbj\|BAC60037.1\| putative carbon-nitrogen hydrolase [Vibrio parahaemolyticus RIMD 2210633... gi\|28806766, gi\|... - gi\|28898548\|ref\|NP_798153.1\| putative carbon-nitrogen hydrolase [Vibrio parahaemolyticus RIMD 221063... gi\|149750419, gi... - gi\|153836144\|ref\|ZP_01988811.1\| hydrolase, carbon-nitrogen family [Vibrio parahaemolyticus AQ3810], ...	283.0	[0..1]	[290..1]
gi\|95112576 - gi\|95112576\|emb\|CAK17304.1\| putative carbon-nitrogen hydrolase [Pseudomonas entomophila L48] gi\|95112576, gi\|... - gi\|95112576\|emb\|CAK17304.1\| putative carbon-nitrogen hydrolase [Pseudomonas entomophila L48], gi\|104...	282.0	[0..1]	[292..1]
gi\|77956181, gi\|... - gi\|77956181\|ref\|ZP_00820309.1\| COG0388: Predicted amidohydrolase [Yersinia bercovieri ATCC 43970], g...	281.0	[0..11]	[294..1]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKVTVAATQ MACSWDLPKN IENAEKLVRQ AHAKGAQVIL IQELFAAPYF CIDQSPEHYA  60
   61 LAQELETSPL IKHFSALAAE LNVVLPLSFF ERANNAYYNS LVMIDADGSV LDVYRKTHIP 120
  121 NGPAYQEKQF FIPGDTGFKV WQTRYAKIGV GICWDQWFPE TARSLALQGA ELIFYPTAIG 180
  181 SEPAYPDIDS QPHWTRVQQG HAAANLVPVI ASNRIGTEAS KYIDGLEMTF YGSSFIADQT 240
  241 GALLAQANKT DEAILVHEFD LEAIAAQRAS WGLFRDRRPE MYGTIASSDG KTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.09691
Match:	1f89A
Description:	hypothetical protein yl85
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.35962310800332	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: