YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50122249, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	213 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50122249, gi|....

Description	E-value	Query Range	Subject Range
gi\|54310267, gi\|... - gi\|54310267\|ref\|YP_131287.1\| putative carbonic anhydrase [Photobacterium profundum SS9], gi\|46914708...	267.0	[0..1]	[212..1]
gi\|36784287, gi\|... - gi\|37524862\|ref\|NP_928206.1\| hypothetical protein plu0867 [Photorhabdus luminescens subsp. laumondii...	265.0	[0..1]	[213..2]
gi\|62178741, gi\|... - gi\|62178741\|ref\|YP_215158.1\| putative carbonic anhydrase [Salmonella enterica subsp. enterica serova... gi\|205347482, gi... - gi\|205360728\|ref\|ZP_02685949.2\| carbonate dehydratase [Salmonella enterica subsp. enterica serovar H...	265.0	[0..1]	[213..18]
gi\|28807512 - gi\|28807512\|dbj\|BAC60777.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633] gi\|28899288, gi\|... - gi\|28899288\|ref\|NP_798893.1\| putative carbonic anhydrase [Vibrio parahaemolyticus RIMD 2210633], gi\|... gi\|153839857, gi... - gi\|153839857\|ref\|ZP_01992524.1\| carbonic anhydrase [Vibrio parahaemolyticus AQ3810], gi\|149746617\|gb...	265.0	[0..1]	[212..1]
gi\|81239563, gi\|... - gi\|82775415\|ref\|YP_401762.1\| carbonic anhydrase [Shigella dysenteriae Sd197], gi\|81239563\|gb\|ABB6027...	265.0	[0..1]	[212..1]
gi\|75854184, gi\|... - gi\|75854184\|ref\|ZP_00761894.1\| COG0288: Carbonic anhydrase [Vibrio sp. Ex25], gi\|254230326\|ref\|ZP_04... gi\|91187816, gi\|... - gi\|91228633\|ref\|ZP_01262550.1\| putative carbonic anhydrase [Vibrio alginolyticus 12G01], gi\|91187816...	264.0	[0..1]	[212..1]
gi\|90412014, gi\|... - gi\|90412014\|ref\|ZP_01220021.1\| putative carbonic anhydrase [Photobacterium profundum 3TCK], gi\|90326...	264.0	[0..1]	[212..1]
gi\|52425120, gi\|... - gi\|52425120\|ref\|YP_088257.1\| CynT protein [Mannheimia succiniciproducens MBEL55E], gi\|52307172\|gb\|AA...	264.0	[0..1]	[212..1]
gi\|12720843, gi\|... - gi\|15602440\|ref\|NP_245512.1\| hypothetical protein PM0575 [Pasteurella multocida subsp. multocida str...	264.0	[0..1]	[212..1]
gi\|85058461, gi\|... - gi\|85058461\|ref\|YP_454163.1\| carbonic anhydrase [Sodalis glossinidius str. 'morsitans'], gi\|84778981...	263.0	[0..1]	[212..1]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKEIETLIAN NQLWSKTMVE EDPGYFERLA QAQRPRFLWI GCSDSRVPAE SLTSLEPGEL  60
   61 FVHRNVANLV IHTDLNCLSV VQYAVEVLEV EHIIICGHYG CGGVQAAVEN PELGLINNWL 120
  121 LHIRDLWYKH SSLLGELPPE QRLNTLCEIN VVEQVYNLGH STIMQSAWKR GQKVTIHGWV 180
  181 YGIQDGRLRD LEVTATNRET LEQRYRRAIS TLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.69897
Match:	1i6oA
Description:	beta-carbonic anhydrase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbonate dehydratase activity	2.96380803089124	bayes_pls_golite062009
catalytic activity	1.85658156053797	bayes_pls_golite062009
binding	1.32962036184517	bayes_pls_golite062009
carbon-oxygen lyase activity	0.678762427493332	bayes_pls_golite062009
hydro-lyase activity	0.661217808517883	bayes_pls_golite062009
lyase activity	0.656288524484184	bayes_pls_golite062009
protein binding	0.132818074687599	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: