YRC Public Data Repository - Protein Structure Prediction

Protein:	MGSA_PECAS
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MGSA_PECAS.

Description	E-value	Query Range	Subject Range
MGSA_VIBPA - Methylglyoxal synthase OS=Vibrio parahaemolyticus GN=mgsA PE=3 SV=1 MGSA_VIBPA - Methylglyoxal synthase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=mgsA PE=3 ... gi\|153838728, gi... - gi\|153838728\|ref\|ZP_01991395.1\| methylglyoxal synthase [Vibrio parahaemolyticus AQ3810], gi\|14974785...	270.0	[0..1]	[151..1]
gi\|77974894 - gi\|77974894\|ref\|ZP_00830432.1\| COG1803: Methylglyoxal synthase [Yersinia frederiksenii ATCC 33641]	266.0	[0..1]	[152..27]
gi\|90413297, gi\|... - gi\|90413297\|ref\|ZP_01221291.1\| methylglyoxal synthase [Photobacterium profundum 3TCK], gi\|90325698\|g...	266.0	[0..1]	[151..1]
MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus GN=mgsA PE=3 SV=1 MGSA_VIBVY - Methylglyoxal synthase OS=Vibrio vulnificus (strain YJ016) GN=mgsA PE=3 SV=1 MGSA_VIBVU - Methylglyoxal synthase OS=Vibrio vulnificus (strain CMCP6) GN=mgsA PE=3 SV=1	266.0	[0..1]	[151..1]
gi\|90439871, gi\|... - gi\|90579038\|ref\|ZP_01234848.1\| methylglyoxal synthase [Vibrio angustum S14], gi\|90439871\|gb\|EAS65052...	266.0	[0..1]	[151..1]
gi\|194539096, gi... - gi\|75855948\|ref\|ZP_00763586.1\| COG1803: Methylglyoxal synthase [Vibrio sp. Ex25], gi\|254229815\|ref\|Z... gi\|91188321, gi\|... - gi\|91227912\|ref\|ZP_01262051.1\| methylglyoxal synthase [Vibrio alginolyticus 12G01], gi\|91188321\|gb\|E...	266.0	[0..1]	[151..1]
gi\|153219990, gi... - gi\|153219990\|ref\|ZP_01951559.1\| methylglyoxal synthase [Vibrio cholerae MAK 757], gi\|124120550\|gb\|EA... MGSA_VIBCH - Methylglyoxal synthase OS=Vibrio cholerae GN=mgsA PE=3 SV=1 gi\|124123737, gi... - gi\|153800762\|ref\|ZP_01955348.1\| methylglyoxal synthase [Vibrio cholerae MZO-3], gi\|124123737\|gb\|EAY4... gi\|153818588, gi... - gi\|153818588\|ref\|ZP_01971255.1\| methylglyoxal synthase [Vibrio cholerae NCTC 8457], gi\|126510871\|gb\|... gi\|229510012, gi... - gi\|229510012\|ref\|ZP_04399492.1\| methylglyoxal synthase [Vibrio cholerae B33], gi\|229352457\|gb\|EEO173... MGSA_VIBC3 - Methylglyoxal synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O39... gi\|75831717, gi\|... - gi\|75831717\|ref\|ZP_00760978.1\| COG1803: Methylglyoxal synthase [Vibrio cholerae MO10], gi\|254849870\|... gi\|125622289, gi... - gi\|75820202\|ref\|ZP_00750255.1\| COG1803: Methylglyoxal synthase [Vibrio cholerae V51], gi\|254225190\|r... gi\|229372148, gi... - gi\|229605662\|ref\|YP_002876366.1\| methylglyoxal synthase [Vibrio cholerae MJ-1236], gi\|229372148\|gb\|A... gi\|194536660, gi... - gi\|75824289\|ref\|ZP_00753748.1\| COG1803: Methylglyoxal synthase [Vibrio cholerae RC385], gi\|254222047... gi\|229528412, gi... - gi\|229528412\|ref\|ZP_04417803.1\| methylglyoxal synthase [Vibrio cholerae 12129(1)], gi\|229334774\|gb\|E... gi\|229336938, gi... - gi\|229526780\|ref\|ZP_04416184.1\| methylglyoxal synthase [Vibrio cholerae bv. albensis VL426], gi\|2293... gi\|75817145, gi\|... - gi\|75817145\|ref\|ZP_00747599.1\| COG1803: Methylglyoxal synthase [Vibrio cholerae V52], gi\|121725856\|r... gi\|229340263, gi... - gi\|229522278\|ref\|ZP_04411694.1\| methylglyoxal synthase [Vibrio cholerae TM 11079-80], gi\|229340263\|g... gi\|229346308, gi... - gi\|229516427\|ref\|ZP_04405874.1\| methylglyoxal synthase [Vibrio cholerae RC9], gi\|229346308\|gb\|EEO112... gi\|229514163, gi... - gi\|229514163\|ref\|ZP_04403624.1\| methylglyoxal synthase [Vibrio cholerae TMA 21], gi\|229348143\|gb\|EEO... gi\|229506130, gi... - gi\|229506130\|ref\|ZP_04395639.1\| methylglyoxal synthase [Vibrio cholerae BX 330286], gi\|229356481\|gb\|... MGSA_VIBCM - Methylglyoxal synthase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=mgsA PE=3 SV=1 gi\|153829201, gi... - gi\|153829201\|ref\|ZP_01981868.1\| methylglyoxal synthase [Vibrio cholerae 623-39], gi\|148875314\|gb\|EDL... gi\|254285733, gi... - gi\|254285733\|ref\|ZP_04960696.1\| methylglyoxal synthase [Vibrio cholerae AM-19226], gi\|197752805\|ref\|... gi\|149741919, gi... - gi\|153824365\|ref\|ZP_01977032.1\| methylglyoxal synthase [Vibrio cholerae MZO-2], gi\|149741919\|gb\|EDM5... MGSA_VIBCH - Methylglyoxal synthase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=m... gi\|121550208, gi... - gi\|121585591\|ref\|ZP_01675387.1\| methylglyoxal synthase [Vibrio cholerae 2740-80], gi\|121550208\|gb\|EA... gi\|153211904, gi... - gi\|153211904\|ref\|ZP_01947751.1\| methylglyoxal synthase [Vibrio cholerae 1587], gi\|124116980\|gb\|EAY35...	265.0	[0..1]	[151..1]
MGSA_PHOPR - Methylglyoxal synthase OS=Photobacterium profundum GN=mgsA PE=3 SV=2 MGSA_PHOPR - Methylglyoxal synthase OS=Photobacterium profundum (strain SS9) GN=mgsA PE=3 SV=2	265.0	[0..1]	[151..1]
MGSA_ECO81 - Methylglyoxal synthase OS=Escherichia coli O81 (strain ED1a) GN=mgsA PE=3 SV=1 sp\|B7UN42\|MGSA_ECO27 - Methylglyoxal synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mgsA PE=3 SV=1 gi\|190907301, gi... - gi\|191172417\|ref\|ZP_03033958.1\| methylglyoxal synthase [Escherichia coli F11], gi\|190907301\|gb\|EDV66... MGSA_ECOL6 - Methylglyoxal synthase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=mgsA PE=3 S... MGSA_ECO45 - Methylglyoxal synthase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=mgsA PE=3 SV=1 MGSA_ECOL6 - Methylglyoxal synthase OS=Escherichia coli O6 GN=mgsA PE=3 SV=2 MGSA_ECO27 - Methylglyoxal synthase OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=mgsA PE=3 SV=1	264.0	[0..1]	[152..1]
gi\|227884077, gi... - gi\|227884077\|ref\|ZP_04001882.1\| methylglyoxal synthase [Escherichia coli 83972], gi\|227838829\|gb\|EEJ... gi\|75240582 - gi\|75240582\|ref\|ZP_00724499.1\| COG1803: Methylglyoxal synthase [Escherichia coli F11] gi\|237707052, gi... - gi\|237707052\|ref\|ZP_04537533.1\| methylglyoxal synthase [Escherichia sp. 3_2_53FAA], gi\|226898262\|gb\|... gi\|91071633, gi\|... - gi\|91210059\|ref\|YP_540045.1\| methylglyoxal synthase [Escherichia coli UTI89], gi\|91071633\|gb\|ABE0651... gi\|110641153, gi... - gi\|110641153\|ref\|YP_668883.1\| methylglyoxal synthase [Escherichia coli 536], gi\|110342745\|gb\|ABG6898... gi\|26107385, gi\|... - gi\|26246985\|ref\|NP_753025.1\| methylglyoxal synthase [Escherichia coli CFT073], gi\|26107385\|gb\|AAN795... gi\|117623173, gi... - gi\|117623173\|ref\|YP_852086.1\| methylglyoxal synthase [Escherichia coli APEC O1], gi\|115512297\|gb\|ABJ...	264.0	[0..1]	[152..4]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFTTRTIPA QKHIALVAHD HCKQSLLDWV GTNKQQLTEH TLYATGTTGN LIQSNTGLPV  60
   61 KSMLSGPMGG DQQVGALISE GKIDLMIFFW DPLNAVPHDP DVKALLRLAT VWNIPVATNR 120
  121 ATADFLINSA LFKEPVQIAI PDYQRYLQDR LK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.0
Match:	1b93A
Description:	Methylglyoxal synthase, MgsA
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
methylglyoxal synthase activity	7.67158041469211	bayes_pls_golite062009
catalytic activity	2.05174935916901	bayes_pls_golite062009
carbon-oxygen lyase activity	0.8193600732138	bayes_pls_golite062009
carbon-oxygen lyase activity, acting on phosphates	0.74427062677768	bayes_pls_golite062009
lyase activity	0.129701662862796	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: