YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50120680, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50120680, gi|....

Description	E-value	Query Range	Subject Range
gi\|224468144, gi... - gi\|224583617\|ref\|YP_002637415.1\| hypothetical protein SPC_1836 [Salmonella enterica subsp. enterica ... gi\|199603075, gi... - gi\|200390630\|ref\|ZP_03217241.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica ser... gi\|197247561, gi... - gi\|197247561\|ref\|YP_002146143.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|194410054, gi... - gi\|194451750\|ref\|YP_002045933.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|205342615, gi... - gi\|205342615\|gb\|EDZ29379.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|168462594, gi... - gi\|195634414\|gb\|EDX52766.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|168241504, gi... - gi\|205339508\|gb\|EDZ26272.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|62128088, gi\|... - gi\|62180455\|ref\|YP_216872.1\| hypothetical protein SC1885 [Salmonella enterica subsp. enterica serova...	227.0	[0..1]	[214..1]
gi\|168259851, gi... - gi\|205350927\|gb\|EDZ37558.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|194403627, gi... - gi\|194444964\|ref\|YP_002041145.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|205328209, gi... - gi\|205328209\|gb\|EDZ14973.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|197288637, gi... - gi\|197288637\|gb\|EDY28012.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=yebE] [protein=putative inner membrane protein] [protein_id=YP_005237839.1] [location=compleme... gi\|16420415, gi\|... - gi\|16765222\|ref\|NP_460837.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164204... gi\|194737643, gi... - gi\|194737643\|ref\|YP_002114915.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|197264501, gi... - gi\|197264501\|ref\|ZP_03164575.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica ser...	226.0	[0..1]	[214..1]
gi\|197093603, gi... - gi\|197362126\|ref\|YP_002141763.1\| hypothetical protein SSPA0922 [Salmonella enterica subsp. enterica ... gi\|56127457, gi\|... - gi\|56413200\|ref\|YP_150275.1\| hypothetical protein SPA0989 [Salmonella enterica subsp. enterica serov...	225.0	[0..1]	[214..1]
gi\|29141478, gi\|... - gi\|29141478\|ref\|NP_804820.1\| hypothetical protein t0997 [Salmonella enterica subsp. enterica serovar... gi\|16760831 - gi\|16760831\|ref\|NP_456448.1\| hypothetical protein STY2086 [Salmonella enterica subsp. enterica serov... gi\|213161275 - gi\|213161275\|ref\|ZP_03346985.1\| hypothetical protein Salmoneentericaenterica_15080 [Salmonella enter... gi\|213648161 - gi\|213648161\|ref\|ZP_03378214.1\| hypothetical protein SentesTy_13269 [Salmonella enterica subsp. ente... gi\|214002652 - gi\|214002652\|ref\|ZP_03413387.1\| hypothetical protein Salmonellentericaenterica_20884 [Salmonella ent... gi\|213420384 - gi\|213420384\|ref\|ZP_03353450.1\| hypothetical protein Salmonentericaenterica_22590 [Salmonella enteri... gi\|25340140, gi\|... - gi\|25340140\|pir\|\|AD0741 conserved hypothetical protein STY2086 [imported] - Salmonella enterica subs... gi\|213426804 - gi\|213426804\|ref\|ZP_03359554.1\| hypothetical protein SentesTyphi_15070 [Salmonella enterica subsp. e... gi\|213582858 - gi\|213582858\|ref\|ZP_03364684.1\| hypothetical protein SentesTyph_17283 [Salmonella enterica subsp. en... gi\|213618639 - gi\|213618639\|ref\|ZP_03372465.1\| hypothetical protein SentesTyp_20100 [Salmonella enterica subsp. ent...	224.0	[0..1]	[214..1]
gi\|190906686, gi... - gi\|75239733\|ref\|ZP_00723696.1\| COG2979: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218365479, gi... - gi\|218558710\|ref\|YP_002391623.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|115513123, gi... - gi\|117623999\|ref\|YP_852912.1\| hypothetical protein APECO1_897 [Escherichia coli APEC O1], gi\|1155131... gi\|91211070, gi\|... - gi\|91211070\|ref\|YP_541056.1\| hypothetical protein UTI89_C2049 [Escherichia coli UTI89], gi\|91072644\|... gi\|110343556, gi... - gi\|110641964\|ref\|YP_669694.1\| hypothetical protein ECP_1790 [Escherichia coli 536], gi\|110343556\|gb\|...	224.0	[0..1]	[214..1]
gi\|227885727, gi... - gi\|227885727\|ref\|ZP_04003532.1\| inner membrane protein YebE [Escherichia coli 83972], gi\|227837300\|g... gi\|26248112, gi\|... - gi\|26248112\|ref\|NP_754152.1\| hypothetical protein c2258 [Escherichia coli CFT073], gi\|26108515\|gb\|AA... gi\|215265131, gi... - gi\|215487059\|ref\|YP_002329490.1\| hypothetical protein E2348C_1971 [Escherichia coli O127:H6 str. E23... gi\|218699583, gi... - gi\|218699583\|ref\|YP_002407212.1\| conserved hypothetical protein; putative inner membrane protein [Es...	223.0	[0..1]	[214..1]
gi\|13362024, gi\|... - gi\|15831810\|ref\|NP_310583.1\| hypothetical protein ECs2556 [Escherichia coli O157:H7], gi\|13362024\|db... gi\|209767624, gi... - pir\|\|D90948 hypothetical protein ECs2556 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208731147, gi... - gi\|208816804\|ref\|ZP_03257924.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208818975, gi... - gi\|208818975\|ref\|ZP_03259295.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|209158473, gi... - gi\|209397073\|ref\|YP_002270928.1\| hypothetical protein ECH74115_2581 [Escherichia coli O157:H7 str. E... gi\|217318226, gi... - gi\|217328879\|ref\|ZP_03444960.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|13362024, gi\|... - gi\|15831810\|ref\|NP_310583.1\| hypothetical protein ECs2556 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189372022, gi... - gi\|189372022\|gb\|EDU90438.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168802376, gi... - gi\|189375636\|gb\|EDU94052.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1688... gi\|195939747 - gi\|195939747\|ref\|ZP_03085129.1\| hypothetical protein EscherichcoliO157_25650 [Escherichia coli O157:... gi\|208810338, gi... - gi\|208810338\|ref\|ZP_03252214.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|189367336, gi... - gi\|189367336\|gb\|EDU85752.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|168770827, gi... - gi\|189360316\|gb\|EDU78735.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168777745, gi... - gi\|187767073\|gb\|EDU30917.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|188999480, gi... - gi\|188999480\|gb\|EDU68466.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|254793470, gi... - gi\|254793470\|ref\|YP_003078307.1\| hypothetical protein ECSP_2420 [Escherichia coli O157:H7 str. TW143... gi\|188013983, gi... - gi\|188013983\|gb\|EDU52105.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189354620, gi... - gi\|189354620\|gb\|EDU73039.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168...	218.0	[0..1]	[214..1]
gi\|15802259, gi\|... - gi\|15802259\|ref\|NP_288283.1\| hypothetical protein Z2897 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|25340138 - pir\|\|H85796 hypothetical protein yebE [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	218.0	[0..1]	[214..1]
gi\|238790441, gi... - gi\|77973012\|ref\|ZP_00828565.1\| COG2979: Uncharacterized protein conserved in bacteria [Yersinia fred...	216.0	[0..1]	[214..14]
gi\|75195911 - gi\|75195911\|ref\|ZP_00705981.1\| COG2979: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|82776431, gi\|... - gi\|82776431\|ref\|YP_402780.1\| hypothetical protein SDY_1132 [Shigella dysenteriae Sd197], gi\|81240579... gi\|124498855, gi... - gi\|124530960\|ref\|ZP_01701416.1\| protein of unknown function DUF533 [Escherichia coli B], gi\|12449885... gi\|169754737, gi... - gi\|170019809\|ref\|YP_001724763.1\| hypothetical protein EcolC_1786 [Escherichia coli ATCC 8739], gi\|16...	216.0	[0..1]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNWLQQIQG LLGAGSKPGS HHQGGKNGNL GDMLKPAALG GLAGVLLSNK SARKIMGSLG  60
   61 KNALIIGGSA AAGVVLWNQY KKRVRDTHQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPQFGTQSSA DNIRARRLIQ ALVFAAKSDG HIDATEKQRI DDNIQQLQLG SDAHRWVQEA  60
   61 IEQPLDPVLL AKDVKNEEEA LEVYFLSCAV IDVDHFMEKS YLDALATELK IPQDVRQSIT 120
  121 NELKSPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	2ou3A
Description:	No description for 2ou3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits