YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50120680, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	217 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50120680, gi|....

Description	E-value	Query Range	Subject Range
gi\|224468144, gi... - gi\|224583617\|ref\|YP_002637415.1\| hypothetical protein SPC_1836 [Salmonella enterica subsp. enterica ... gi\|199603075, gi... - gi\|200390630\|ref\|ZP_03217241.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica ser... gi\|197247561, gi... - gi\|197247561\|ref\|YP_002146143.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|194410054, gi... - gi\|194451750\|ref\|YP_002045933.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|205342615, gi... - gi\|205342615\|gb\|EDZ29379.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|168462594, gi... - gi\|195634414\|gb\|EDX52766.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|168241504, gi... - gi\|205339508\|gb\|EDZ26272.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|62128088, gi\|... - gi\|62180455\|ref\|YP_216872.1\| hypothetical protein SC1885 [Salmonella enterica subsp. enterica serova...	227.0	[0..1]	[214..1]
gi\|168259851, gi... - gi\|205350927\|gb\|EDZ37558.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|194403627, gi... - gi\|194444964\|ref\|YP_002041145.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|205328209, gi... - gi\|205328209\|gb\|EDZ14973.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... gi\|197288637, gi... - gi\|197288637\|gb\|EDY28012.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica serovar... lcl\|NC_016856.1_... - [gene=yebE] [protein=putative inner membrane protein] [protein_id=YP_005237839.1] [location=compleme... gi\|16420415, gi\|... - gi\|16765222\|ref\|NP_460837.1\| putative inner membrane protein [Salmonella typhimurium LT2], gi\|164204... gi\|194737643, gi... - gi\|194737643\|ref\|YP_002114915.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica se... gi\|197264501, gi... - gi\|197264501\|ref\|ZP_03164575.1\| inner membrane protein YebE [Salmonella enterica subsp. enterica ser...	226.0	[0..1]	[214..1]
gi\|197093603, gi... - gi\|197362126\|ref\|YP_002141763.1\| hypothetical protein SSPA0922 [Salmonella enterica subsp. enterica ... gi\|56127457, gi\|... - gi\|56413200\|ref\|YP_150275.1\| hypothetical protein SPA0989 [Salmonella enterica subsp. enterica serov...	225.0	[0..1]	[214..1]
gi\|29141478, gi\|... - gi\|29141478\|ref\|NP_804820.1\| hypothetical protein t0997 [Salmonella enterica subsp. enterica serovar... gi\|16760831 - gi\|16760831\|ref\|NP_456448.1\| hypothetical protein STY2086 [Salmonella enterica subsp. enterica serov... gi\|213161275 - gi\|213161275\|ref\|ZP_03346985.1\| hypothetical protein Salmoneentericaenterica_15080 [Salmonella enter... gi\|213648161 - gi\|213648161\|ref\|ZP_03378214.1\| hypothetical protein SentesTy_13269 [Salmonella enterica subsp. ente... gi\|214002652 - gi\|214002652\|ref\|ZP_03413387.1\| hypothetical protein Salmonellentericaenterica_20884 [Salmonella ent... gi\|213420384 - gi\|213420384\|ref\|ZP_03353450.1\| hypothetical protein Salmonentericaenterica_22590 [Salmonella enteri... gi\|25340140, gi\|... - gi\|25340140\|pir\|\|AD0741 conserved hypothetical protein STY2086 [imported] - Salmonella enterica subs... gi\|213426804 - gi\|213426804\|ref\|ZP_03359554.1\| hypothetical protein SentesTyphi_15070 [Salmonella enterica subsp. e... gi\|213582858 - gi\|213582858\|ref\|ZP_03364684.1\| hypothetical protein SentesTyph_17283 [Salmonella enterica subsp. en... gi\|213618639 - gi\|213618639\|ref\|ZP_03372465.1\| hypothetical protein SentesTyp_20100 [Salmonella enterica subsp. ent...	224.0	[0..1]	[214..1]
gi\|190906686, gi... - gi\|75239733\|ref\|ZP_00723696.1\| COG2979: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|218365479, gi... - gi\|218558710\|ref\|YP_002391623.1\| conserved hypothetical protein; putative inner membrane protein [Es... gi\|115513123, gi... - gi\|117623999\|ref\|YP_852912.1\| hypothetical protein APECO1_897 [Escherichia coli APEC O1], gi\|1155131... gi\|91211070, gi\|... - gi\|91211070\|ref\|YP_541056.1\| hypothetical protein UTI89_C2049 [Escherichia coli UTI89], gi\|91072644\|... gi\|110343556, gi... - gi\|110641964\|ref\|YP_669694.1\| hypothetical protein ECP_1790 [Escherichia coli 536], gi\|110343556\|gb\|...	224.0	[0..1]	[214..1]
gi\|227885727, gi... - gi\|227885727\|ref\|ZP_04003532.1\| inner membrane protein YebE [Escherichia coli 83972], gi\|227837300\|g... gi\|26248112, gi\|... - gi\|26248112\|ref\|NP_754152.1\| hypothetical protein c2258 [Escherichia coli CFT073], gi\|26108515\|gb\|AA... gi\|215265131, gi... - gi\|215487059\|ref\|YP_002329490.1\| hypothetical protein E2348C_1971 [Escherichia coli O127:H6 str. E23... gi\|218699583, gi... - gi\|218699583\|ref\|YP_002407212.1\| conserved hypothetical protein; putative inner membrane protein [Es...	223.0	[0..1]	[214..1]
gi\|13362024, gi\|... - gi\|15831810\|ref\|NP_310583.1\| hypothetical protein ECs2556 [Escherichia coli O157:H7], gi\|13362024\|db... gi\|209767624, gi... - pir\|\|D90948 hypothetical protein ECs2556 [imported] - Escherichia coli (strain O157:H7, substrain R... gi\|208731147, gi... - gi\|208816804\|ref\|ZP_03257924.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4045], gi... gi\|208818975, gi... - gi\|208818975\|ref\|ZP_03259295.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4042], gi... gi\|209158473, gi... - gi\|209397073\|ref\|YP_002270928.1\| hypothetical protein ECH74115_2581 [Escherichia coli O157:H7 str. E... gi\|217318226, gi... - gi\|217328879\|ref\|ZP_03444960.1\| putative membrane protein [Escherichia coli O157:H7 str. TW14588], g... gi\|13362024, gi\|... - gi\|15831810\|ref\|NP_310583.1\| hypothetical protein ECs2556 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189372022, gi... - gi\|189372022\|gb\|EDU90438.1\| putative membrane protein [Escherichia coli O157:H7 str. EC869], gi\|1687... gi\|168802376, gi... - gi\|189375636\|gb\|EDU94052.1\| putative membrane protein [Escherichia coli O157:H7 str. EC508], gi\|1688... gi\|195939747 - gi\|195939747\|ref\|ZP_03085129.1\| hypothetical protein EscherichcoliO157_25650 [Escherichia coli O157:... gi\|208810338, gi... - gi\|208810338\|ref\|ZP_03252214.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4206], gi... gi\|189367336, gi... - gi\|189367336\|gb\|EDU85752.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4501], gi\|168... gi\|168770827, gi... - gi\|189360316\|gb\|EDU78735.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|168777745, gi... - gi\|187767073\|gb\|EDU30917.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4196], gi\|168... gi\|188999480, gi... - gi\|188999480\|gb\|EDU68466.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|254793470, gi... - gi\|254793470\|ref\|YP_003078307.1\| hypothetical protein ECSP_2420 [Escherichia coli O157:H7 str. TW143... gi\|188013983, gi... - gi\|188013983\|gb\|EDU52105.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4113], gi\|168... gi\|189354620, gi... - gi\|189354620\|gb\|EDU73039.1\| putative membrane protein [Escherichia coli O157:H7 str. EC4401], gi\|168...	218.0	[0..1]	[214..1]
gi\|15802259, gi\|... - gi\|15802259\|ref\|NP_288283.1\| hypothetical protein Z2897 [Escherichia coli O157:H7 EDL933], gi\|125158... gi\|25340138 - pir\|\|H85796 hypothetical protein yebE [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	218.0	[0..1]	[214..1]
gi\|238790441, gi... - gi\|77973012\|ref\|ZP_00828565.1\| COG2979: Uncharacterized protein conserved in bacteria [Yersinia fred...	216.0	[0..1]	[214..14]
gi\|75195911 - gi\|75195911\|ref\|ZP_00705981.1\| COG2979: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|82776431, gi\|... - gi\|82776431\|ref\|YP_402780.1\| hypothetical protein SDY_1132 [Shigella dysenteriae Sd197], gi\|81240579... gi\|124498855, gi... - gi\|124530960\|ref\|ZP_01701416.1\| protein of unknown function DUF533 [Escherichia coli B], gi\|12449885... gi\|169754737, gi... - gi\|170019809\|ref\|YP_001724763.1\| hypothetical protein EcolC_1786 [Escherichia coli ATCC 8739], gi\|16...	216.0	[0..1]	[214..1]

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Predicted Domain #1

Region A:
Residues: [1-90]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNWLQQIQG LLGAGSKPGS HHQGGKNGNL GDMLKPAALG GLAGVLLSNK SARKIMGSLG  60
   61 KNALIIGGSA AAGVVLWNQY KKRVRDTHQD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [91-217]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPQFGTQSSA DNIRARRLIQ ALVFAAKSDG HIDATEKQRI DDNIQQLQLG SDAHRWVQEA  60
   61 IEQPLDPVLL AKDVKNEEEA LEVYFLSCAV IDVDHFMEKS YLDALATELK IPQDVRQSIT 120
  121 NELKSPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	5.39794
Match:	2ou3A
Description:	No description for 2ou3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits