YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|49611146, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|49611146, gi|....

Description	E-value	Query Range	Subject Range
gi\|77960503, gi\|... - gi\|77960503\|ref\|ZP_00824371.1\| hypothetical protein YmolA_01003217 [Yersinia mollaretii ATCC 43969],...	364.0	[0..1]	[192..1]
gi\|122089767, gi... - gi\|123442806\|ref\|YP_001006783.1\| transcriptional activator FlhC [Yersinia enterocolitica subsp. ente... FLHC_YEREN - Flagellar transcriptional regulator FlhC OS=Yersinia enterocolitica GN=flhC PE=3 SV=1 gi\|238785462, gi... - gi\|77957114\|ref\|ZP_00821179.1\| hypothetical protein YberA_01002669 [Yersinia bercovieri ATCC 43970],...	364.0	[0..1]	[192..1]
gi\|238723541, gi... - gi\|77975748\|ref\|ZP_00831282.1\| hypothetical protein YfreA_01000392 [Yersinia frederiksenii ATCC 3364...	362.0	[0..1]	[192..1]
FLHC_XENNE - Flagellar transcriptional regulator FlhC OS=Xenorhabdus nematophila GN=flhC PE=3 SV=1	361.0	[0..1]	[192..1]
gi\|238795041, gi... - gi\|77976911\|ref\|ZP_00832377.1\| hypothetical protein YintA_01003303 [Yersinia intermedia ATCC 29909],...	361.0	[0..1]	[192..1]
FLHC_SERMA - Flagellar transcriptional regulator FlhC OS=Serratia marcescens GN=flhC PE=3 SV=1	360.0	[0..1]	[192..2]
gi\|37525777, gi\|... - gi\|37525777\|ref\|NP_929121.1\| transcriptional activator FlhC [Photorhabdus luminescens subsp. laumond...	359.0	[0..1]	[192..1]
gi\|238912499 - gi\|238912499\|ref\|ZP_04656336.1\| transcriptional activator FlhC [Salmonella enterica subsp. enterica ... FLHC_SALTY - Flagellar transcriptional regulator FlhC OS=Salmonella typhimurium GN=flhC PE=3 SV=1 gi\|205359830, gi... - gi\|205359830\|ref\|ZP_03224426.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|204931080, gi... - gi\|204931080\|ref\|ZP_03221906.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|207856555, gi... - gi\|207856555\|ref\|YP_002243206.1\| transcriptional activator FlhC [Salmonella enterica subsp. enterica... gi\|197265455, gi... - gi\|197265455\|ref\|ZP_03165529.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|195634252, gi... - gi\|195873227\|ref\|ZP_02696472.2\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|198243477, gi... - gi\|198243477\|ref\|YP_002215158.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp... gi\|197288669, gi... - gi\|197301077\|ref\|ZP_02663617.2\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|194451472, gi... - gi\|194451472\|ref\|YP_002045979.1\| transcriptional activator FlhC [Salmonella enterica subsp. enterica... FLHC_SALTY - Flagellar transcriptional regulator FlhC OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700... gi\|168259796, gi... - gi\|205350725\|gb\|EDZ37356.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp. ent... gi\|194737288, gi... - gi\|194737288\|ref\|YP_002114961.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp... gi\|194458809, gi... - gi\|194472445\|ref\|ZP_03078429.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|168234009, gi... - gi\|205331991\|gb\|EDZ18755.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp. ent... gi\|205327904, gi... - gi\|205327904\|gb\|EDZ14668.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp. ent... lcl\|NC_016856.1_... - [gene=flhC] [protein=transcriptional activator FlhC] [protein_id=YP_005237893.1] [location=complemen... FLHC_SALTY - Flagellar transcriptional activator flhC OS=Salmonella typhimurium GN=flhC PE=3 SV=1	358.0	[0..1]	[192..1]
gi\|200390929, gi... - gi\|200390929\|ref\|ZP_03217540.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|205322907, gi... - gi\|205357246\|ref\|ZP_02346188.2\| flagellar transcriptional activator FlhC [Salmonella enterica subsp.... gi\|197215356, gi... - gi\|197251653\|ref\|YP_002146096.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp... gi\|197362083, gi... - gi\|197362083\|ref\|YP_002141720.1\| transcriptional activator FlhC [Salmonella enterica subsp. enterica... gi\|205339302, gi... - gi\|205339302\|gb\|EDZ26066.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp. ent... gi\|16420462 - gi\|16420462\|gb\|AAL20840.1\| regulator of flagellar biosynthesis [Salmonella enterica subsp. enterica ... gi\|194443758, gi... - gi\|194443758\|ref\|YP_002041191.1\| flagellar transcriptional activator FlhC [Salmonella enterica subsp... gi\|161613515, gi... - gi\|161613515\|ref\|YP_001587480.1\| transcriptional activator FlhC [Salmonella enterica subsp. enterica... gi\|56127414, gi\|... - gi\|56413157\|ref\|YP_150232.1\| transcriptional activator FlhC [Salmonella enterica subsp. enterica ser... gi\|62128134, gi\|... - gi\|62180501\|ref\|YP_216918.1\| transcriptional activator FlhC [Salmonella enterica subsp. enterica ser...	358.0	[0..1]	[192..3]
gi\|145318991, gi... - gi\|146312115\|ref\|YP_001177189.1\| transcriptional activator FlhC [Enterobacter sp. 638], gi\|145318991... gi\|15551740 - gi\|15551740\|emb\|CAC69398.1\| flhC protein [Enterobacter sp. 22]	358.0	[0..1]	[192..1]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAEKSIVQEA KDIQLAMELI SLGARLQMLE SETQLSRGRL IKLYKELRGS PPPKGMLPFS  60
   61 TDWFMTWEQN IHSSMFYNAY SFLIKNGQCS GVEAVIKSYR LYLEQCPPQS DSPLLALTRA 120
  121 WTLVRFVDSG MLQLSSCNCC KGMFITHAHQ PKNSFVCSLC QPPSRAVKRR KLSQNLADII 180
  181 PQLLDEQVKH AV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	99.0
Match:	2avuE
Description:	Structure of the Escherichia coli FlhDC complex, a prokaryotic heteromeric regulator of transcription
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	1.76728328288819	bayes_pls_golite062009
transcription activator activity	0.41227092363175	bayes_pls_golite062009
transcription repressor activity	0.334304405404029	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: