YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50120232, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	236 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50120232, gi|....

Description	E-value	Query Range	Subject Range
gi\|89086768, gi\|... - gi\|89098523\|ref\|ZP_01171406.1\| aspartate racemase [Bacillus sp. NRRL B-14911], gi\|89086768\|gb\|EAR658...	242.0	[0..3]	[235..4]
gi\|196029413, gi... - gi\|196039710\|ref\|ZP_03107014.1\| aspartate racemase family protein [Bacillus cereus NVH0597-99], gi\|1... gi\|228826127, gi... - gi\|228933529\|ref\|ZP_04096380.1\| Aspartate racemase [Bacillus thuringiensis serovar andalousiensis BG... gi\|228914826, gi... - gi\|228914826\|ref\|ZP_04078435.1\| Aspartate racemase [Bacillus thuringiensis serovar pulsiensis BGSC 4... gi\|49329106, gi\|... - gi\|49477550\|ref\|YP_036336.1\| aspartate racemase [Bacillus thuringiensis serovar konkukian str. 97-27... gi\|218534989, gi... - gi\|218903367\|ref\|YP_002451201.1\| aspartate racemase family protein [Bacillus cereus AH820], gi\|21853...	240.0	[0..3]	[234..1]
gi\|21958382, gi\|... - gi\|22125487\|ref\|NP_668910.1\| resistance protein [Yersinia pestis KIM], gi\|21958382\|gb\|AAM85161.1\|AE0...	239.0	[0..1]	[232..45]
gi\|167632939, gi... - gi\|167632939\|ref\|ZP_02391265.1\| aspartate racemase family protein [Bacillus anthracis str. A0442], g... gi\|164712004, gi... - gi\|165872211\|ref\|ZP_02216849.1\| aspartate racemase family protein [Bacillus anthracis str. A0488], g... gi\|170669526, gi... - gi\|170686450\|ref\|ZP_02877671.1\| aspartate racemase family protein [Bacillus anthracis str. A0465], g... gi\|167641077, gi... - gi\|167641077\|ref\|ZP_02399333.1\| aspartate racemase family protein [Bacillus anthracis str. A0193], g... gi\|177650980, gi... - gi\|177650980\|ref\|ZP_02933877.1\| aspartate racemase family protein [Bacillus anthracis str. A0174], g... gi\|227814962, gi... - gi\|227814962\|ref\|YP_002814971.1\| aspartate racemase family protein [Bacillus anthracis str. CDC 684]... gi\|170708451, gi... - gi\|170708451\|ref\|ZP_02898894.1\| aspartate racemase family protein [Bacillus anthracis str. A0389], g... gi\|229268171, gi... - gi\|229603763\|ref\|YP_002866580.1\| aspartate racemase family protein [Bacillus anthracis str. A0248], ... gi\|254684804 - gi\|254684804\|ref\|ZP_05148664.1\| aspartate racemase family protein [Bacillus anthracis str. CNEVA-906... gi\|190560983, gi... - gi\|190567928\|ref\|ZP_03020839.1\| aspartate racemase family protein [Bacillus anthracis Tsiankovskii-I... gi\|254737250 - gi\|254737250\|ref\|ZP_05194954.1\| aspartate racemase family protein [Bacillus anthracis str. Western N... gi\|254743563 - gi\|254743563\|ref\|ZP_05201248.1\| aspartate racemase family protein [Bacillus anthracis str. Kruger B] gi\|254751566 - gi\|254751566\|ref\|ZP_05203603.1\| aspartate racemase family protein [Bacillus anthracis str. Vollum] gi\|254759081 - gi\|254759081\|ref\|ZP_05211108.1\| aspartate racemase family protein [Bacillus anthracis str. Australia... gi\|49185078, gi\|... - gi\|49185078\|ref\|YP_028330.1\| aspartate racemase family protein [Bacillus anthracis str. Sterne], gi\|... gi\|47502665, gi\|... - gi\|47527517\|ref\|YP_018866.1\| aspartate racemase family protein [Bacillus anthracis str. 'Ames Ancest... gi\|30262238, gi\|... - gi\|30262238\|ref\|NP_844615.1\| aspartate racemase family protein [Bacillus anthracis str. Ames], gi\|30... gi\|21400101, gi\|... - gi\|65319528\|ref\|ZP_00392487.1\| COG1794: Aspartate racemase [Bacillus anthracis str. A2012], ref\|NP_6...	238.0	[0..3]	[231..1]
gi\|24376434, gi\|... - gi\|24378582\|ref\|NP_720537.1\| putative amino acid recemase [Streptococcus mutans UA159], gi\|24376434\|...	238.0	[0..3]	[233..1]
gi\|163940018, gi... - gi\|89207876\|ref\|ZP_01186405.1\| Aspartate racemase [Bacillus weihenstephanensis KBAB4], gi\|89154170\|g...	238.0	[0..3]	[234..1]
gi\|30020311, gi\|... - gi\|30020311\|ref\|NP_831942.1\| aspartate racemase [Bacillus cereus ATCC 14579], gi\|29895862\|gb\|AAP0914...	238.0	[0..3]	[233..1]
gi\|74491146, gi\|... - gi\|75761380\|ref\|ZP_00741353.1\| Aspartate racemase [Bacillus thuringiensis serovar israelensis ATCC 3... gi\|228858740, gi... - gi\|228900814\|ref\|ZP_04065029.1\| hypothetical protein bthur0014_20160 [Bacillus thuringiensis IBL 422...	238.0	[0..3]	[233..1]
gi\|52143230, gi\|... - gi\|52143230\|ref\|YP_083598.1\| aspartate racemase [Bacillus cereus E33L], gi\|51976699\|gb\|AAU18249.1\| a...	236.0	[0..3]	[234..1]
gi\|47570153, gi\|... - gi\|47570153\|ref\|ZP_00240809.1\| aspartate racemase [Bacillus cereus G9241], gi\|47553172\|gb\|EAL11567.1...	236.0	[0..3]	[234..1]

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Predicted Domain #1

Region A:
Residues: [1-236]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSKTLGLIG GMSWESTIPY YRIINEYVKS QLGGLHSAKI ILHSVDFHEI EQLQSQGDWE  60
   61 QAAAVLGNIA VGLRQAGADA IVICTNTMHK VADEVERASQ LPLLHIADAT GASLKQHGLK 120
  121 KVGLLGTRYT MEQDFYRQRI QERFSVDVIV PDQTGKELVN RIIYDELCLG NINDTSRQVY 180
  181 REIIQQLEQQ GAEGIILGCT EIPLLIGAGD ATVPLFDTSY LHAIAAAKFA LNQPSS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.30103
Match:	1jflA
Description:	Aspartate racemase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.23803491380613	bayes_pls_golite062009
isomerase activity	1.14649673588906	bayes_pls_golite062009
racemase and epimerase activity	1.1014330874433	bayes_pls_golite062009
racemase and epimerase activity, acting on amino acids and derivatives	1.04948585609892	bayes_pls_golite062009
amino-acid racemase activity	0.633688007780886	bayes_pls_golite062009
glutamate racemase activity	0.161309936221225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: