YRC Public Data Repository - Protein Structure Prediction

Protein:	FABZ_PECAS
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	151 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FABZ_PECAS.

Description	E-value	Query Range	Subject Range
FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum GN=fabZ PE=3 SV=1 FABZ_PHOPR - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Photobacterium profundum (strain SS9) GN=fa...	203.0	[0..1]	[149..1]
gi\|90413540, gi\|... - gi\|90413540\|ref\|ZP_01221531.1\| (3R)-hydroxymyristoyl ACP dehydratase [Photobacterium profundum 3TCK]...	203.0	[0..1]	[149..1]
gi\|91191570, gi\|... - gi\|91223484\|ref\|ZP_01258749.1\| (3R)-hydroxymyristoyl ACP dehydratase [Vibrio alginolyticus 12G01], g...	201.0	[0..1]	[149..1]
lcl\|NC_016856.1_... - [gene=fabZ] [protein=(3R)-hydroxymyristoyl-ACP dehydratase] [protein_id=YP_005235899.1] [location=26... gi\|62126430, gi\|... - gi\|62178797\|ref\|YP_215214.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Salmonella enterica subsp. enter...	200.0	[0..1]	[151..31]
gi\|24050384, gi\|... - ref\|NP_706125.1\| (3R)-hydroxymyristol acyl carrier protein dehydratase [Shigella flexneri 2a str. 30... gi\|26106523, gi\|... - gi\|26246126\|ref\|NP_752165.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Escherichia coli CFT073], gi\|261... gi\|110804232, gi... - gi\|110804232\|ref\|YP_687752.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Shigella flexneri 5 str. 8401],... gi\|91070824, gi\|... - gi\|91209250\|ref\|YP_539236.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Escherichia coli UTI89], gi\|9107...	200.0	[0..1]	[151..32]
FABZ_VIBPA - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio parahaemolyticus GN=fabZ PE=3 SV=... FABZ_VIBPA - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio parahaemolyticus serotype O3:K6 (str... gi\|153839484, gi... - gi\|153839484\|ref\|ZP_01992151.1\| beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ [Vibrio par...	199.0	[0..1]	[149..1]
gi\|68304070\|gb\|A... - FabZ [Escherichia coli] gi\|68304070 - gi\|68304070\|gb\|AAY89693.1\| FabZ [Escherichia coli]	198.0	[0..1]	[151..16]
gi\|89075409, gi\|... - gi\|89075409\|ref\|ZP_01161826.1\| (3R)-hydroxymyristoyl ACP dehydratase [Photobacterium sp. SKA34], gi\|...	198.0	[0..1]	[148..1]
FABZ_VIBVU - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio vulnificus (strain CMCP6) GN=fabZ PE... FABZ_VIBVY - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio vulnificus (strain YJ016) GN=fabZ PE... FABZ_VIBVU - (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase OS=Vibrio vulnificus GN=fabZ PE=3 SV=2	198.0	[0..1]	[149..1]
FABZ_VIBFM - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio fischeri (strain MJ11) GN=fabZ PE=3 ... FABZ_VIBF1 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Vibrio fischeri (strain ATCC 700601 / ES114...	198.0	[0..1]	[149..1]

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Predicted Domain #1

Region A:
Residues: [1-151]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTDTHTLNI EEILELLPHR FPFLLVDRVL DFEKGKFLRA VKNVSFNEPF FQGHFPGKPI  60
   61 FPGVLILEAM AQATGILAFK SVGKLEPGEL YYFAAVDEAR FKRPVQPGDQ MILEVEFIKE 120
  121 RRGVARFKGV AKVDGEVACE ASMMCARRRE S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.221849
Match:	1u1zA
Description:	The Structure of (3R)-hydroxyacyl-ACP dehydratase (FabZ)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
CoA hydrolase activity	1.75530090056705	bayes_pls_golite062009
catalytic activity	1.11649534052993	bayes_pls_golite062009
thiolester hydrolase activity	0.65794221902015	bayes_pls_golite062009
3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity	0.57527342054578	bayes_pls_golite062009
acyl-CoA thioesterase activity	0.24094527143225	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: