YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|50119144, gi\|...
Organism:	Pectobacterium atrosepticum SCRI1043
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|50119144, gi|....

Description	E-value	Query Range	Subject Range
gi\|108810343, gi... - gi\|108810343\|ref\|YP_646110.1\| carboxymethylenebutenolidase [Yersinia pestis Nepal516], gi\|108773991\|... gi\|108806235, gi... - gi\|108806235\|ref\|YP_650151.1\| putative carboxymethylenebutenolidase [Yersinia pestis Antiqua], gi\|10... gi\|167468710 - gi\|167468710\|ref\|ZP_02333414.1\| dienelactone hydrolase family protein [Yersinia pestis FV-1] gi\|166960977, gi... - gi\|167420848\|ref\|ZP_02312601.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Orient... gi\|167054821, gi... - gi\|167426302\|ref\|ZP_02318055.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Mediae... gi\|166213548, gi... - gi\|166213548\|ref\|ZP_02239583.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Antiqu... gi\|167048777, gi... - gi\|167401884\|ref\|ZP_02307372.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Antiqu... gi\|165912960, gi... - gi\|165939187\|ref\|ZP_02227738.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Orient... gi\|165989401, gi... - gi\|166011632\|ref\|ZP_02232530.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Antiqu... gi\|22124358, gi\|... - gi\|22124358\|ref\|NP_667781.1\| carboxymethylenebutenolidase [Yersinia pestis KIM], gi\|21957135\|gb\|AAM8... gi\|162421591, gi... - gi\|162421591\|ref\|YP_001607970.1\| dienelactone hydrolase family protein [Yersinia pestis Angola], gi\|... gi\|45437881, gi\|... - gi\|45443014\|ref\|NP_994553.1\| putative carboxymethylenebutenolidase [Yersinia pestis biovar Microtus ... gi\|165921815, gi... - gi\|165926291\|ref\|ZP_02222123.1\| dienelactone hydrolase family protein [Yersinia pestis biovar Orient... gi\|145212350, gi... - gi\|145600654\|ref\|YP_001164730.1\| carboxymethylenebutenolidase [Yersinia pestis Pestoides F], gi\|1452...	187.0	[0..1]	[275..1]
gi\|24115126, gi\|... - gi\|24115126\|ref\|NP_709636.1\| putative enzyme [Shigella flexneri 2a str. 301], gi\|24054396\|gb\|AAN4534...	184.0	[0..1]	[274..23]
gi\|77978486 - gi\|77978486\|ref\|ZP_00833914.1\| COG0412: Dienelactone hydrolase and related enzymes [Yersinia interme...	183.0	[0..8]	[275..2]
gi\|25499550, gi\|... - gi\|25499550\|pir\|\|F86070 probable enzyme Z5352 [imported] - Escherichia coli (strain O157:H7, substra... gi\|12518707, gi\|... - gi\|15804422\|ref\|NP_290462.1\| putative enzyme [Escherichia coli O157:H7 EDL933], gi\|12518707\|gb\|AAG59... gi\|13364236, gi\|... - gi\|15834014\|ref\|NP_312787.1\| hypothetical protein ECs4760 [Escherichia coli O157:H7], gi\|13364236\|db... gi\|13364236, gi\|... - gi\|15834014\|ref\|NP_312787.1\| hypothetical protein ECs4760 [Escherichia coli O157:H7 str. Sakai], gi\|...	183.0	[0..1]	[274..23]
gi\|82546183, gi\|... - gi\|82546183\|ref\|YP_410130.1\| putative enzyme [Shigella boydii Sb227], gi\|81247594\|gb\|ABB68302.1\| put...	182.0	[0..1]	[274..23]
gi\|75209543 - gi\|75209543\|ref\|ZP_00709764.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75188572 - gi\|75188572\|ref\|ZP_00701839.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75238280 - gi\|75238280\|ref\|ZP_00722279.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli... gi\|75230791 - gi\|75230791\|ref\|ZP_00717254.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	182.0	[0..1]	[274..19]
gi\|81243137, gi\|... - gi\|82778989\|ref\|YP_405338.1\| putative enzyme [Shigella dysenteriae Sd197], gi\|81243137\|gb\|ABB63847.1...	182.0	[0..1]	[274..19]
gi\|75197713 - gi\|75197713\|ref\|ZP_00707783.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	182.0	[0..1]	[274..19]
gi\|83569334 - gi\|83569334\|ref\|ZP_00920789.1\| COG0412: Dienelactone hydrolase and related enzymes [Shigella dysente...	181.0	[0..1]	[274..19]
gi\|75256246 - gi\|75256246\|ref\|ZP_00727924.1\| COG0412: Dienelactone hydrolase and related enzymes [Escherichia coli...	181.0	[0..1]	[274..19]

Back

Predicted Domain #1

Region A:
Residues: [1-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTDEQTTFK HLPQRLSPAV EPQSFSIITT DSVGIIASET TIPSQGEQLP AYIARPANHD  60
   61 GPLPIVLVVQ EIFGVHQHIQ DVCRRLAKQG YMAIAPELYF RQGDPSQYND IQQILTELVH 120
  121 KVPDTQVLSD LDHTANWAIK QGGDASKLAI TGFCWGGRIT WLYAAHNPQL KAAVAWYGKF 180
  181 TGEKTLNSPK NPVDIATELE APVLGLYGAK DGSIPLEHVD IMRQALRAAN ATAEIIVYPD 240
  241 AGHAFHADYR PSYHEESARD GWQRMLAWFQ KNGVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	24.69897
Match:	1ve6A
Description:	Crystal structure of an acylpeptide hydrolase/esterase from Aeropyrum pernix K1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity	1.58619437002934	bayes_pls_golite062009
catalytic activity	1.39629727416851	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	0.635759022538529	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: