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View Structure Prediction Details

Protein: gi|30260071, gi|...
Organism: Bacillus anthracis str. Ames
Length: 275 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30260071, gi|....

Description E-value Query
Range		 Subject
Range
gi|23495354 - gi|23495354|dbj|BAC20171.1| spermidine synthase [Malus x domestica]
 1.0E-57 [1..274] [49..330]
gi|49425361 - gi|49425361|gb|AAT66041.1| spermidine synthase [Cucumis sativus]
 2.0E-57 [1..274] [28..314]
SPDE_COFAR - Spermidine synthase OS=Coffea arabica PE=2 SV=1
 2.0E-57 [1..274] [24..311]
SPD1_PEA - Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1
 4.0E-57 [1..274] [43..329]
SPD1_ARATH - Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1
 6.0E-57 [1..275] [44..330]
gi|531202, gi|45... - gi|531202|gb|AAA36633.1| spermidine synthase, ref|NP_003123.1| spermidine synthase [Homo sapiens]
 2.0E-56 [2..274] [18..298]
SPD2_DATST - Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1
 2.0E-56 [1..275] [26..313]
SPD1_HYONI - Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1
 2.0E-56 [1..275] [24..311]

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Predicted Domain #1
Region A:
Residues: [1-275] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELWFTEKQT KHFGITARIN RTLHTEQTEF QKLDMVETEE FGNMLILDGM VMTTEKDEFV  60
   61 YHEMVAHVPL FTHPNPENVL VVGGGDGGVI REVLKHPSVK KATLVEIDGK VIEYSKQYLP 120
  121 SIAGALDNER VEVKVGDGFL HIAESENEYD VIMVDSTEPV GPAVNLFTKG FYAGISKALK 180
  181 EDGIFVAQTD NPWFTPELIT TVFKDVKEIF PITRLYTANI PTYPSGLWTF TIGSKKHDPL 240
  241 EVSEERFHEI ETKYYTKELH NAAFALPKFV GDLIK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.522879
Match: 1iy9A
Description: Spermidine synthase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
spermidine synthase activity 2.31131562815571 bayes_pls_golite062009
transferase activity 1.77671966857605 bayes_pls_golite062009
transcription regulator activity 1.61435611638306 bayes_pls_golite062009
DNA binding 1.53375495589674 bayes_pls_golite062009
nucleic acid binding 1.31440474302645 bayes_pls_golite062009
catalytic activity 1.25333584501255 bayes_pls_golite062009
binding 0.976078016260105 bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity 0.837368219068434 bayes_pls_golite062009
N-methyltransferase activity 0.69697643153076 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.644010137949015 bayes_pls_golite062009
methyltransferase activity 0.635463629299812 bayes_pls_golite062009
protein methyltransferase activity 0.57386401278889 bayes_pls_golite062009
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