YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258691, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258691, gi|....

Description	E-value	Query Range	Subject Range
gi\|152976388, gi... - gi\|89203650\|ref\|ZP_01182262.1\| Formylmethionine deformylase [Bacillus cereus subsp. cytotoxis NVH 39...	1.0E-63	[1..184]	[25..208]
gi\|229198091, gi... - gi\|229198091\|ref\|ZP_04324802.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1293... gi\|228642776, gi... - gi\|229140704\|ref\|ZP_04269252.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-... gi\|222097423, gi... - gi\|222097423\|ref\|YP_002531480.1\| polypeptide deformylase [Bacillus cereus Q1], gi\|221241481\|gb\|ACM14... gi\|217961461, gi... - gi\|217961461\|ref\|YP_002340029.1\| peptide deformylase [Bacillus cereus AH187], gi\|217068218\|gb\|ACJ824... gi\|206978074, gi... - gi\|206978074\|ref\|ZP_03238958.1\| peptide deformylase [Bacillus cereus H3081.97], gi\|206743701\|gb\|EDZ5... gi\|42738998, gi\|... - gi\|42783070\|ref\|NP_980317.1\| peptide deformylase [Bacillus cereus ATCC 10987], gi\|42738998\|gb\|AAS429...	1.0E-63	[1..184]	[1..184]
gi\|228818529, gi... - gi\|228941135\|ref\|ZP_04103690.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensi... gi\|228954250, gi... - gi\|228954250\|ref\|ZP_04116277.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensi... gi\|229071475, gi... - gi\|229071475\|ref\|ZP_04204696.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus F6518... gi\|228671827, gi... - gi\|229111445\|ref\|ZP_04240996.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus Rock1... gi\|228785644, gi... - gi\|228974067\|ref\|ZP_04134639.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus thuringiensi... gi\|228723682, gi... - gi\|229047661\|ref\|ZP_04193247.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH676... gi\|228591293, gi... - gi\|229192182\|ref\|ZP_04319149.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus ATCC ... gi\|229129252, gi... - gi\|229129252\|ref\|ZP_04258224.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus BDRD-... gi\|228631136, gi... - gi\|229152174\|ref\|ZP_04280367.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus m1550... DEF2_BACCR - Peptide deformylase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB...	1.0E-63	[1..184]	[1..184]
gi\|52141515, gi\|... - gi\|52141515\|ref\|YP_085313.1\| peptide deformylase [Bacillus cereus E33L], gi\|51974984\|gb\|AAU16534.1\| ...	2.0E-63	[1..184]	[1..184]
gi\|229498273, gi... - gi\|229498273\|ref\|ZP_04391970.1\| peptide deformylase [Geobacillus sp. Y412MC52], gi\|229330963\|gb\|EEN9... gi\|56379434, gi\|... - gi\|56419592\|ref\|YP_146910.1\| peptide deformylase [Geobacillus kaustophilus HTA426], gi\|56379434\|dbj\|... gi\|221087659, gi... - gi\|221087659\|ref\|ZP_03557196.1\| peptide deformylase [Geobacillus sp. Y412MC61], gi\|220708545\|gb\|EED6...	3.0E-63	[1..184]	[1..184]
DEF2_GEOSE - Peptide deformylase 2 OS=Geobacillus stearothermophilus PE=1 SV=1	3.0E-63	[1..184]	[1..184]
gi\|47565850, gi\|... - gi\|47565850\|ref\|ZP_00236889.1\| polypeptide deformylase [Bacillus cereus G9241], gi\|47557130\|gb\|EAL15...	9.0E-63	[1..184]	[1..184]
gi\|75762798, gi\|... - gi\|75762798\|ref\|ZP_00742622.1\| Peptide deformylase [Bacillus thuringiensis serovar israelensis ATCC ...	3.0E-61	[1..181]	[1..181]
gi\|163941714, gi... - gi\|89206415\|ref\|ZP_01184974.1\| Formylmethionine deformylase [Bacillus weihenstephanensis KBAB4], gi\|... gi\|229061641, gi... - gi\|229061641\|ref\|ZP_04198980.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH603... gi\|228748130, gi... - gi\|229013180\|ref\|ZP_04170324.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus mycoides DSM... gi\|229168715, gi... - gi\|229168715\|ref\|ZP_04296436.1\| Peptide deformylase (Polypeptide deformylase) [Bacillus cereus AH621...	4.0E-61	[1..184]	[1..184]
gi\|89085666, gi\|... - gi\|89099513\|ref\|ZP_01172388.1\| peptide deformylase [Bacillus sp. NRRL B-14911], gi\|89085666\|gb\|EAR64...	4.0E-58	[1..184]	[1..184]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLTMKDVIRE GDPILRNVAE EVVIPASEED TNTLKEMIEF VINSQDPEMA EKYSLRPGIG  60
   61 LAAPQIGISK KMIAVHVTDT DGTLYSHALF NPKIISHSVE RTYLQSGEGC LSVDREVPGY 120
  121 VPRYTRITVK ATSINGEEVK LRLKGLPAIV FQHEIDHLNG VMFYDHINKE NPFAAPDGSK 180
  181 PLER

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	1lqyA
Description:	Peptide deformylase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	2.58820956037645	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	2.29341894440799	bayes_pls_golite062009
peptide deformylase activity	2.09701270257336	bayes_pls_golite062009
hydrolase activity	1.74603757697733	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.59643176725105	bayes_pls_golite062009
formylmethionine deformylase activity	0.90550535791718	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: