YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30253906, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	554 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30253906, gi|....

Description	E-value	Query Range	Subject Range
gi\|228944175, gi... - gi\|228944175\|ref\|ZP_04106554.1\| Alpha-glucosidase [Bacillus thuringiensis serovar monterrey BGSC 4AJ... gi\|228834100, gi... - gi\|228925622\|ref\|ZP_04088711.1\| Alpha-glucosidase [Bacillus thuringiensis serovar pondicheriensis BG... gi\|229182754, gi... - gi\|229182754\|ref\|ZP_04309994.1\| Alpha-glucosidase [Bacillus cereus BGSC 6E1], gi\|228600727\|gb\|EEK583... gi\|229120027, gi... - gi\|229120027\|ref\|ZP_04249282.1\| Alpha-glucosidase [Bacillus cereus 95/8201], gi\|228663493\|gb\|EEL1907... gi\|65317799 - gi\|65317799\|ref\|ZP_00390758.1\| COG0366: Glycosidases [Bacillus anthracis str. A2012]	0.0	[1..554]	[33..586]
gi\|42779561, gi\|... - gi\|42779561\|ref\|NP_976808.1\| glycosyl hydrolase family protein [Bacillus cereus ATCC 10987], gi\|4273...	0.0	[1..554]	[1..554]
gi\|30018621, gi\|... - gi\|30018621\|ref\|NP_830252.1\| exo-alpha-1,4-glucosidase [Bacillus cereus ATCC 14579], gi\|29894162\|gb\|...	0.0	[1..554]	[3..556]
gi\|74492915, gi\|... - gi\|75759580\|ref\|ZP_00739667.1\| Exo-alpha-1,4-glucosidase [Bacillus thuringiensis serovar israelensis...	0.0	[1..554]	[8..561]
gi\|220933085, gi... - gi\|89209664\|ref\|ZP_01188059.1\| Alpha amylase, catalytic region [Halothermothrix orenii H 168], gi\|89...	0.0	[1..553]	[1..561]
gi\|52144877, gi\|... - gi\|52144877\|ref\|YP_081952.1\| alpha-glucosidase [Bacillus cereus E33L], gi\|51978346\|gb\|AAU19896.1\| al...	0.0	[1..554]	[1..554]
gi\|89204730, gi\|... - gi\|89204730\|ref\|ZP_01183306.1\| Alpha amylase, catalytic region [Bacillus weihenstephanensis KBAB4], ...	0.0	[1..553]	[1..553]
O16G_GEOTM - Oligo-1,6-glucosidase OS=Geobacillus thermoglucosidasius GN=malL PE=1 SV=1	0.0	[1..553]	[1..559]
gi\|152022942, gi... - gi\|89200004\|ref\|ZP_01178760.1\| Alpha amylase, catalytic region [Bacillus cereus subsp. cytotoxis NVH...	0.0	[1..554]	[1..554]
gi\|89088491, gi\|... - gi\|89096476\|ref\|ZP_01169368.1\| glycosyl hydrolase family protein [Bacillus sp. NRRL B-14911], gi\|890...	0.0	[1..553]	[1..551]

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Predicted Domain #1

Region A:
Residues: [1-554]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNKTWWKEAV AYQIYPRSFM DSNGDGIGDL QGIIAKLDYL KDLGIDVIWI CPMYKSPNDD  60
   61 NGYDISDYQD IMDEFGTMED FDALLDEVHK RDMKLIIDLV INHTSDEHPW FIESRSSKDN 120
  121 PKRDWYIWHD GKDGAEPNNW ESIFNGSAWE YDEVTGQYYL HLFSRKQPDL NWENKEVREV 180
  181 LYDTVNWWLD KGIDGFRVDA ISHIKKEDGF KDMPNPKGLK YVPSFDKHMN VDGIQPLLEE 240
  241 LKENTFSKYD IMTVGEANGV KIEDAELWVG EEQGKFNMVF QFEHLSLWDA EKKKDLDVVG 300
  301 LKKVLTKWQK GLENKGWNAL YIENHDKPRI VSTWGDDKQY WRESATALGA MYFFMHGTPF 360
  361 IYQGQEIGMT NVQFPNIEDY DDVAIKNLYR EKIAEGVSHQ DMMEIIWASC RDNSRTPMHW 420
  421 DDEINAGFTT GTPWFGMNQN YKEINVAKQK NEENSIFNFY KKMIALKKEH DVLNYGTYDL 480
  481 LLEDDPQIYA YTRTLNDEKI VVISNISKEE AVYNEDLFAL ERKRLLLNNY EVAEHEQLTT 540
  541 ITLKPYETRV YRIS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	123.0
Match:	1uokA
Description:	CRYSTAL STRUCTURE OF B. CEREUS OLIGO-1,6-GLUCOSIDASE
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
hydrolase activity, hydrolyzing O-glycosyl compounds	4.11319792356479	bayes_pls_golite062009
hydrolase activity, acting on glycosyl bonds	3.92012282533754	bayes_pls_golite062009
hydrolase activity	3.21770945631891	bayes_pls_golite062009
chitinase activity	2.45357334610104	bayes_pls_golite062009
structural molecule activity	2.28030619331997	bayes_pls_golite062009
trehalase activity	2.11042620996316	bayes_pls_golite062009
alpha-amylase activity	2.09193270404736	bayes_pls_golite062009
amylase activity	2.03484942782894	bayes_pls_golite062009
catalytic activity	1.85569074294201	bayes_pls_golite062009
alpha-glucosidase activity	0.96543619590958	bayes_pls_golite062009
glucosidase activity	0.766503513427695	bayes_pls_golite062009
hexosaminidase activity	0.763360027922833	bayes_pls_golite062009
binding	0.63693798355947	bayes_pls_golite062009
carbohydrate binding	0.4998423581103	bayes_pls_golite062009
maltase activity	0.442635030512661	bayes_pls_golite062009
sugar binding	0.36459095255871	bayes_pls_golite062009
transferase activity, transferring hexosyl groups	0.266938437560648	bayes_pls_golite062009
beta-N-acetylhexosaminidase activity	0.263065978664289	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: