YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259925, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	310 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259925, gi|....

Description	E-value	Query Range	Subject Range
gi\|49478921, gi\|... - gi\|49478921\|ref\|YP_039212.1\| transposase [Bacillus thuringiensis serovar konkukian str. 97-27], gi\|4...	2.0E-63	[1..310]	[19..328]
gi\|30261832, gi\|... - gi\|30261832\|ref\|NP_844209.1\| IS605 family transposase OrfB [Bacillus anthracis str. Ames], gi\|302560... gi\|49178593, gi\|... - gi\|49184666\|ref\|YP_027918.1\| IS605 family transposase OrfB [Bacillus anthracis str. Sterne], gi\|4917... gi\|47527073, gi\|... - gi\|47527073\|ref\|YP_018422.1\| IS605 family transposase OrfB [Bacillus anthracis str. 'Ames Ancestor']... gi\|254734686 - gi\|254734686\|ref\|ZP_05192398.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. Western Nor... gi\|254723914 - gi\|254723914\|ref\|ZP_05185700.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. A1055] gi\|254683331 - gi\|254683331\|ref\|ZP_05147192.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. CNEVA-9066] gi\|227005362, gi... - gi\|227815394\|ref\|YP_002815403.1\| transposase, IS605 family, OrfB [Bacillus anthracis str. CDC 684], ... gi\|254759875 - gi\|254759875\|ref\|ZP_05211899.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. Australia 9... gi\|254755338 - gi\|254755338\|ref\|ZP_05207372.1\| transposase, IS605 family, OrfA [Bacillus anthracis str. Vollum]	5.0E-60	[1..310]	[19..328]
gi\|56420636, gi\|... - gi\|56420636\|ref\|YP_147954.1\| transposase [Geobacillus kaustophilus HTA426], gi\|56380478\|dbj\|BAD76386...	4.0E-44	[3..308]	[15..367]
gi\|75227943 - gi\|75227943\|ref\|ZP_00714643.1\| COG0675: Transposase and inactivated derivatives [Escherichia coli B7...	5.0E-42	[32..305]	[39..354]
gi\|75208727 - gi\|75208727\|ref\|ZP_00709019.1\| COG0675: Transposase and inactivated derivatives [Escherichia coli B1...	1.0E-41	[32..305]	[39..354]
gi\|209919159, gi... - gi\|209919159\|ref\|YP_002293243.1\| putative transposase [Escherichia coli SE11], gi\|209912418\|dbj\|BAG7... gi\|75190825 - gi\|75190825\|ref\|ZP_00704092.1\| COG0675: Transposase and inactivated derivatives [Escherichia coli E2...	3.0E-41	[32..305]	[39..354]
gi\|84692502, gi\|... - gi\|84716716\|ref\|ZP_01023194.1\| Transposase, IS605 OrfB [Polaromonas naphthalenivorans CJ2], gi\|84692...	5.0E-41	[34..305]	[58..372]

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Predicted Domain #1

Region A:
Residues: [1-133]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYETHIKNGT LPPIIFGGRK NFYERMKDKI SNQEWKDLRT RQLYSRGDKS KKGNLNMRIT  60
   61 VDDCGQGWLE IANPLGRTNG KTKSPRIKVP IMIPYRFYHQ ITNVVMGKQI GVNPKGKPII 120
  121 EHQKYSVEII RKQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [134-310]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEFYVNITFD ETEIGRVLDF KETPQSDVIA GIDVNPDRIA VSLCTKQGNF KGSKIFYLHN  60
   61 LNAFLTNKRA TIIGQIVQQI KTWLLENNVG GIVLEDLKFQ QSHDTDKYSN RNFHQFTYKK 120
  121 MLNSLIRMSL RNGFSVKTVN PAYTSVIGKL KYSQNFGISV HEAAAFTIAR RGLELQE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.5
Match:	1vhxA
Description:	Crystal structure of Putative Holliday junction resolvase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.53924789709051	bayes_pls_golite062009
nuclease activity	1.33447740033502	bayes_pls_golite062009
hydrolase activity, acting on ester bonds	1.23347009562032	bayes_pls_golite062009
hydrolase activity	1.22075366957547	bayes_pls_golite062009
exonuclease activity	1.20458535230258	bayes_pls_golite062009
transposase activity	0.965908684749648	bayes_pls_golite062009
deoxyribonuclease activity	0.330313608754008	bayes_pls_golite062009
ribonuclease activity	0.26323966197813	bayes_pls_golite062009
exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	0.248165509716873	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: