YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259913, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	360 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259913, gi|....

Description	E-value	Query Range	Subject Range
SPEE2_BACCR - Polyamine aminopropyltransferase 2 OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC ... gi\|229130458, gi... - gi\|229130458\|ref\|ZP_04259414.1\| Spermidine synthase 2 [Bacillus cereus BDRD-Cer4], gi\|228652797\|gb\|E...	9.0E-67	[1..360]	[1..366]
gi\|228903684, gi... - gi\|228903684\|ref\|ZP_04067804.1\| Spermidine synthase 2 [Bacillus thuringiensis IBL 4222], gi\|22885595... gi\|75759423, gi\|... - gi\|75759423\|ref\|ZP_00739517.1\| Spermidine synthase [Bacillus thuringiensis serovar israelensis ATCC ...	1.0E-65	[1..360]	[1..360]
gi\|51973825, gi\|... - gi\|52140356\|ref\|YP_086475.1\| spermidine synthase [Bacillus cereus E33L], gi\|51973825\|gb\|AAU15375.1\| ...	6.0E-64	[1..360]	[1..369]
gi\|49481187, gi\|... - gi\|49481187\|ref\|YP_039199.1\| spermidine synthase [Bacillus thuringiensis serovar konkukian str. 97-2...	2.0E-62	[1..360]	[1..405]
gi\|47554887, gi\|... - gi\|47570014\|ref\|ZP_00240676.1\| spermine/spermidine synthase family protein [Bacillus cereus G9241], ...	5.0E-61	[1..360]	[1..402]
gi\|13936641 - gi\|13936641\|gb\|AAK49871.1\|AF280403_1 putrescine N-methyltransferase 2 [Nicotiana attenuata]	6.0E-61	[3..346]	[37..366]
gi\|6523839 - gi\|6523839\|gb\|AAF14879.1\|AF126810_1 putrescine N-methyltransferase [Nicotiana tabacum]	7.0E-61	[3..346]	[41..370]
gi\|4210548 - gi\|4210548\|dbj\|BAA74544.1\| putrescine N-methyltransferase [Nicotiana sylvestris]	1.0E-60	[3..346]	[96..425]

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Predicted Domain #1

Region A:
Residues: [1-360]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKHRKQSKI KIYRITNYKK DKRSELDSNK FELEQQAVEN KQDKQGKQDN QVQSENVVIV  60
   61 PTDSHNLDIW DEISLKEIQA GEHTNLFAEQ SNYQNINLLQ VSDIRLYLDK QLQFSSVDEQ 120
  121 IYHEALVHPI MSKVIDPKRV LILGGGDGLA LREVLKYETV LHVDLVDLDG SMIDMARNVP 180
  181 ELVSLNKSAF FDNRVNTHVC DAKEFLSSPS SLYDVIIIDF PDPATELLST LYTSELFARI 240
  241 ATFLTEDGAF VCQSNSPADA PLVYWSIGNT IEHAGLTVKS YHTIVPSFGT DWGFHIAANS 300
  301 VYVLDQIEQL YVVPTPRTLP SLLFPLFQFK EEHLEQRNFA LLNSESNLIL HQCYKKEMEF 360
  361

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	1xj5A
Description:	X-RAY STRUCTURE OF SPERMIDINE SYNTHASE FROM ARABIDOPSIS THALIANA GENE AT1G23820
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
spermidine synthase activity	2.38563015463215	bayes_pls_golite062009
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.27388514102581	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.535429947810431	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: