YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264913, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264913, gi|....

Description	E-value	Query Range	Subject Range
gi\|49478788, gi\|... - gi\|49478788\|ref\|YP_038893.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon...	0.0	[1..286]	[1..286]
gi\|52140652, gi\|... - gi\|52140652\|ref\|YP_086178.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L], gi\|51974121...	0.0	[1..286]	[1..286]
gi\|42739985, gi\|... - gi\|42784054\|ref\|NP_981301.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATC...	0.0	[1..286]	[1..286]
gi\|30022916, gi\|... - gi\|30022916\|ref\|NP_834547.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579], gi\|29... gi\|228636105, gi... - gi\|229147423\|ref\|ZP_04275772.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24], gi\|... gi\|229130131, gi... - gi\|229130131\|ref\|ZP_04259092.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4], gi\|... gi\|228671156, gi... - gi\|229112316\|ref\|ZP_04241855.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15], gi\|2... gi\|229048562, gi... - gi\|229048562\|ref\|ZP_04194122.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676], gi\|2287...	0.0	[1..286]	[1..286]
gi\|74488129, gi\|... - gi\|75764384\|ref\|ZP_00743899.1\| D-alanyl-D-alanine metallocarboxypeptidase [Bacillus thuringiensis se...	0.0	[1..286]	[1..286]
gi\|47555330, gi\|... - gi\|47568027\|ref\|ZP_00238733.1\| D-alanyl-D-alanine carboxypeptidase family protein, putative [Bacillu...	1.0E-98	[1..286]	[1..286]
gi\|163864784, gi... - gi\|89204346\|ref\|ZP_01182924.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis...	2.0E-97	[1..286]	[1..286]
gi\|25487375 - pir\|\|B83876 D-alanyl-D-alanine carboxypeptidase BH1810 [imported] - Bacillus halodurans (strain C-12... gi\|15614373, gi\|... - gi\|15614373\|ref\|NP_242676.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus halodurans C-125], gi\|101...	6.0E-92	[1..286]	[1..290]
gi\|33416272, gi\|... - gi\|33416272\|ref\|NP_878018.1\| D-alanyl-D-alanine carboxypeptidase VanY [Staphylococcus aureus], gi\|33... gi\|227069724 - gi\|227069724\|gb\|ACP19238.1\| D-alanyl-D-alanine carboxypeptidase VanY [Enterococcus faecium]	3.0E-88	[9..284]	[1..285]
gi\|110556113 - gi\|110556113\|dbj\|BAE98132.1\| vanY [Enterococcus faecalis] VANY_ENTFC - D-alanyl-D-alanine carboxypeptidase OS=Enterococcus faecium GN=vanY PE=2 SV=1 gi\|149126 - gi\|149126\|gb\|AAA98147.1\| D,D-carboxypeptidase [Plasmid pIP816]	3.0E-87	[22..284]	[31..292]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWVFISFF IACTICVGVY ISPLFQKEID VKIGGENGAV KNANIEKIEV TKEQIYKGDL  60
   61 LLVNKDYPVK KDSIRSDIIN VNHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [85-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SELVRGYVIF DRNLRLSKDV VKKFLNVVDA AGKDGVQHFL MNSGYRDFKE QSKLYKEMGS  60
   61 DYALPAGYSE HNLGLSLDVG STQKKMEKAP EGKWIEENVW KHGFVLRYPK NKSHITGIQY 120
  121 EPWHIRYVGL PHSAIMQKKK ITLEEYLDFL KEKKEITTDV EGKKYTVSYY KVSGNMKVNV 180
  181 PLNKQYEISG NNVDGVIVTV QE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1r44A
Description:	Crystal Structure of VanX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.579809417316389	bayes_pls_golite062009
binding	0.116181943513295	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: