YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264913, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	286 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264913, gi|....

Description	E-value	Query Range	Subject Range
gi\|49478788, gi\|... - gi\|49478788\|ref\|YP_038893.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus thuringiensis serovar kon...	0.0	[1..286]	[1..286]
gi\|52140652, gi\|... - gi\|52140652\|ref\|YP_086178.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus E33L], gi\|51974121...	0.0	[1..286]	[1..286]
gi\|42739985, gi\|... - gi\|42784054\|ref\|NP_981301.1\| D-alanyl-D-alanine carboxypeptidase family protein [Bacillus cereus ATC...	0.0	[1..286]	[1..286]
gi\|30022916, gi\|... - gi\|30022916\|ref\|NP_834547.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus ATCC 14579], gi\|29... gi\|228636105, gi... - gi\|229147423\|ref\|ZP_04275772.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-ST24], gi\|... gi\|229130131, gi... - gi\|229130131\|ref\|ZP_04259092.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus BDRD-Cer4], gi\|... gi\|228671156, gi... - gi\|229112316\|ref\|ZP_04241855.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus Rock1-15], gi\|2... gi\|229048562, gi... - gi\|229048562\|ref\|ZP_04194122.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus cereus AH676], gi\|2287...	0.0	[1..286]	[1..286]
gi\|74488129, gi\|... - gi\|75764384\|ref\|ZP_00743899.1\| D-alanyl-D-alanine metallocarboxypeptidase [Bacillus thuringiensis se...	0.0	[1..286]	[1..286]
gi\|47555330, gi\|... - gi\|47568027\|ref\|ZP_00238733.1\| D-alanyl-D-alanine carboxypeptidase family protein, putative [Bacillu...	1.0E-98	[1..286]	[1..286]
gi\|163864784, gi... - gi\|89204346\|ref\|ZP_01182924.1\| Serine-type D-Ala-D-Ala carboxypeptidase [Bacillus weihenstephanensis...	2.0E-97	[1..286]	[1..286]
gi\|25487375 - pir\|\|B83876 D-alanyl-D-alanine carboxypeptidase BH1810 [imported] - Bacillus halodurans (strain C-12... gi\|15614373, gi\|... - gi\|15614373\|ref\|NP_242676.1\| D-alanyl-D-alanine carboxypeptidase [Bacillus halodurans C-125], gi\|101...	6.0E-92	[1..286]	[1..290]
gi\|33416272, gi\|... - gi\|33416272\|ref\|NP_878018.1\| D-alanyl-D-alanine carboxypeptidase VanY [Staphylococcus aureus], gi\|33... gi\|227069724 - gi\|227069724\|gb\|ACP19238.1\| D-alanyl-D-alanine carboxypeptidase VanY [Enterococcus faecium]	3.0E-88	[9..284]	[1..285]
gi\|110556113 - gi\|110556113\|dbj\|BAE98132.1\| vanY [Enterococcus faecalis] VANY_ENTFC - D-alanyl-D-alanine carboxypeptidase OS=Enterococcus faecium GN=vanY PE=2 SV=1 gi\|149126 - gi\|149126\|gb\|AAA98147.1\| D,D-carboxypeptidase [Plasmid pIP816]	3.0E-87	[22..284]	[31..292]

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Predicted Domain #1

Region A:
Residues: [1-84]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKWVFISFF IACTICVGVY ISPLFQKEID VKIGGENGAV KNANIEKIEV TKEQIYKGDL  60
   61 LLVNKDYPVK KDSIRSDIIN VNHN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.441	d.58.23	Probable ACP-binding domain of malonyl-CoA ACP transacylase
View	Download	0.388	d.58.40	D-ribose-5-phosphate isomerase (RpiA), lid domain
View	Download	0.383	b.34.2	SH3-domain
View	Download	0.376	g.46.1	Metallothionein
View	Download	0.355	a.178.1	Soluble domain of poliovirus core protein 3a

Predicted Domain #2

Region A:
Residues: [85-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SELVRGYVIF DRNLRLSKDV VKKFLNVVDA AGKDGVQHFL MNSGYRDFKE QSKLYKEMGS  60
   61 DYALPAGYSE HNLGLSLDVG STQKKMEKAP EGKWIEENVW KHGFVLRYPK NKSHITGIQY 120
  121 EPWHIRYVGL PHSAIMQKKK ITLEEYLDFL KEKKEITTDV EGKKYTVSYY KVSGNMKVNV 180
  181 PLNKQYEISG NNVDGVIVTV QE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.0
Match:	1r44A
Description:	Crystal Structure of VanX
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.579809417316389	bayes_pls_golite062009
binding	0.116181943513295	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: