YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264836, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	528 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264836, gi|....

Description	E-value	Query Range	Subject Range
PCKA_BACCN - Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391...	0.0	[1..528]	[1..528]
PCKA_BACWK - Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus weihenstephanensis (strain KBAB4) GN=pckA PE=3 S... gi\|228647837, gi... - gi\|229135610\|ref\|ZP_04264389.1\| Phosphoenolpyruvate carboxykinase [Bacillus cereus BDRD-ST196], gi\|2...	0.0	[1..528]	[1..528]
PCKA2_MOOTA - Phosphoenolpyruvate carboxykinase [ATP] 2 OS=Moorella thermoacetica (strain ATCC 39073) GN=pckA2 PE=...	0.0	[5..527]	[4..524]
gi\|13785471 - gi\|13785471\|dbj\|BAB43909.1\| phosphoenolpyruvate carboxykinase [Flaveria pringlei]	0.0	[9..526]	[128..656]
PCKA_GEOKA - Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacillus kaustophilus (strain HTA426) GN=pckA PE=3 SV=... PPCK_GEOKA, PCKA... - Phosphoenolpyruvate carboxykinase [ATP] OS=Geobacillus kaustophilus GN=pckA PE=3 SV=1, Phosphoenolpy...	0.0	[1..527]	[1..527]
PCKA_CALS4 - Phosphoenolpyruvate carboxykinase [ATP] OS=Caldanaerobacter subterraneus subsp. tengcongensis (strai... PPCK_THETN, PCKA... - Phosphoenolpyruvate carboxykinase [ATP] OS=Thermoanaerobacter tengcongensis GN=pckA PE=3 SV=1, Phosp...	0.0	[8..527]	[4..520]
gi\|115451989, gi... - gi\|215734813\|dbj\|BAG95535.1\| unnamed protein product [Oryza sativa Japonica Group], gi\|115451989\|ref...	0.0	[14..526]	[138..661]
gi\|13785469 - gi\|13785469\|dbj\|BAB43908.1\| phosphoenolpyruvate carboxykinase [Flaveria trinervia]	0.0	[9..526]	[132..660]
PCKA_BACHD - Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FE... PPCK_BACHD, PCKA... - Phosphoenolpyruvate carboxykinase [ATP] OS=Bacillus halodurans GN=pckA PE=3 SV=1, Phosphoenolpyruvat...	0.0	[1..526]	[1..525]

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Predicted Domain #1

Region A:
Residues: [1-528]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTVNVQIGL HELLNGSNAQ IQLSVPQLVE KVLMRNEGKL TSTGAVSAST GKYTGRSPKD  60
   61 KFIVKEASVA DKIAWGAVNQ PISEEHFNKL YTKVLEYLKE KEELFVFKGF AGADRNYRLP 120
  121 IQVINEYAWH NLFVHQLFIR PTEEELTTHE SEFTIVSAPN FKADPAVDGT NSEAFIMVSF 180
  181 EKRIVLIGGT EYAGEMKKSI FSIMNFLLPE QDILSMHCSA NVGEEGDVAL FFGLSGTGKT 240
  241 TLSADPNRKL IGDDEHGWSD NGVFNIEGGC YAKCVNLSHE KEPQIFDAIT FGSVLENVII 300
  301 NDQTRIADYN DTTLTENTRA AYPMHAIDNI ILPSVAGHPN TIIFLTADAS GVLPPISKLS 360
  361 KEQAMYHFLS GYTSKLAGTE RGVTSPQATF STCFGSPFLP LDASRYAEML GEKIEKHDAK 420
  421 VFLVNTGWTG GEYGVGKRMN LGYTRAMIQA ALNGELAKTE TAKHDIFGLE VPLHVPGVPD 480
  481 EVLMPEQTWA DKAAYKAKAI ELANEFKANF KKFDSVSEDI INLGGPIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	1j3bA
Description:	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-liase)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
phosphoenolpyruvate carboxykinase activity	5.427657115096	bayes_pls_golite062009
phosphoenolpyruvate carboxykinase (ATP) activity	4.07297753409796	bayes_pls_golite062009
phosphoenolpyruvate carboxykinase (GTP) activity	3.22045404005498	bayes_pls_golite062009
catalytic activity	1.59551963655826	bayes_pls_golite062009
lyase activity	0.903636804009288	bayes_pls_golite062009
carbon-carbon lyase activity	0.63361553348301	bayes_pls_golite062009
carboxy-lyase activity	0.110170641189915	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: