YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264812, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	188 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264812, gi|....

Description	E-value	Query Range	Subject Range
gi\|51892959, gi\|... - gi\|51892959\|ref\|YP_075650.1\| recombinase [Symbiobacterium thermophilum IAM 14863], gi\|51856648\|dbj\|B...	2.0E-39	[1..185]	[106..289]
gi\|98662087 - gi\|98662087\|dbj\|GAA00976.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	8.0E-39	[1..185]	[153..336]
gi\|66967447, gi\|... - gi\|66967447\|ref\|ZP_00414983.1\| Phage integrase:Phage integrase, N-terminal SAM-like [Arthrobacter sp...	1.0E-38	[1..183]	[150..337]
gi\|83573258, gi\|... - gi\|83590344\|ref\|YP_430353.1\| tyrosine recombinase XerD subunit [Moorella thermoacetica ATCC 39073], ...	2.0E-38	[1..184]	[107..289]
gi\|67863988, gi\|... - gi\|67928759\|ref\|ZP_00521945.1\| Phage integrase:Phage integrase, N-terminal SAM-like [Solibacter usit...	2.0E-38	[1..185]	[295..478]
XERD_BACHD - Tyrosine recombinase XerD OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... XERD_BACHD - Tyrosine recombinase xerD OS=Bacillus halodurans GN=xerD PE=3 SV=1	3.0E-38	[1..186]	[111..295]
gi\|116095121, gi... - gi\|116629539\|ref\|YP_814711.1\| integrase [Lactobacillus gasseri ATCC 33323], gi\|116095121\|gb\|ABJ60273... gi\|238834835, gi... - gi\|238852689\|ref\|ZP_04643099.1\| tyrosine recombinase XerD [Lactobacillus gasseri 202-4], gi\|23883483...	3.0E-38	[1..185]	[112..297]
gi\|89086178, gi\|... - gi\|89099048\|ref\|ZP_01171927.1\| tyrosine recombinase [Bacillus sp. NRRL B-14911], gi\|89086178\|gb\|EAR6...	3.0E-38	[1..186]	[108..293]
gi\|71492418, gi\|... - gi\|71540897\|ref\|ZP_00662720.1\| Phage integrase:Phage integrase, N-terminal SAM-like [Syntrophomonas ...	4.0E-38	[1..185]	[108..291]

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Predicted Domain #1

Region A:
Residues: [1-188]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVVEALKDI SQIEAMKKYL KEHSQRDYLL FVIGINTGLK ITELLSMKFE DVLHEDGTVK  60
   61 EFYSLPVKDE KFKQDIYLNT KVKEALLEYV QSIDVKRENY VFQSNKTTNS ITRQQAYRVI 120
  121 HNAAEAVGIV GKIGTNSMRK TFGFHAYKRG IAIALLQKHF HHATPSETLK YLGISKDEEF 180
  181 KTEIDVDL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.221849
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	4.99325011803106	bayes_pls_golite062009
integrase activity	3.60695091575172	bayes_pls_golite062009
catalytic activity	2.22520758916604	bayes_pls_golite062009
structure-specific DNA binding	0.11292854906722	bayes_pls_golite062009
DNA binding	0.10970863758177	bayes_pls_golite062009
nucleic acid binding	0.06580979261817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: