YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264583, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	597 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264583, gi|....

Description	E-value	Query Range	Subject Range
gi\|152025667, gi... - gi\|89200344\|ref\|ZP_01179098.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit, ...	0.0	[1..596]	[1..596]
gi\|222097983, gi... - gi\|222097983\|ref\|YP_002532040.1\| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus Q1],... gi\|217962000, gi... - gi\|217962000\|ref\|YP_002340570.1\| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus AH18... gi\|206744052, gi... - gi\|206977751\|ref\|ZP_03238642.1\| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus H3081... gi\|229198665, gi... - gi\|229198665\|ref\|ZP_04325366.1\| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus m1293]... gi\|229141247, gi... - gi\|229141247\|ref\|ZP_04269786.1\| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus BDRD-S... gi\|42783690, gi\|... - gi\|42783690\|ref\|NP_980937.1\| succinate dehydrogenase flavoprotein subunit [Bacillus cereus ATCC 1098...	0.0	[1..597]	[1..597]
gi\|51974457, gi\|... - gi\|52140988\|ref\|YP_085843.1\| succinate dehydrogenase flavoprotein subunit [Bacillus cereus E33L], gi...	0.0	[1..597]	[1..597]
gi\|49330232, gi\|... - gi\|49478676\|ref\|YP_038568.1\| succinate dehydrogenase flavoprotein subunit [Bacillus thuringiensis se... gi\|196039316, gi... - gi\|196039316\|ref\|ZP_03106622.1\| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus NVH05... gi\|229093612, gi... - gi\|229093612\|ref\|ZP_04224713.1\| Succinate dehydrogenase flavoprotein subunit [Bacillus cereus Rock3-... gi\|225866491, gi... - gi\|225866491\|ref\|YP_002751869.1\| succinate dehydrogenase, flavoprotein subunit [Bacillus cereus 03BB...	0.0	[1..597]	[1..597]
gi\|30022595, gi\|... - gi\|30022595\|ref\|NP_834226.1\| succinate dehydrogenase flavoprotein subunit [Bacillus cereus ATCC 1457...	0.0	[1..597]	[1..597]
gi\|163864445, gi... - gi\|89205299\|ref\|ZP_01183870.1\| Succinate dehydrogenase or fumarate reductase, flavoprotein subunit, ...	0.0	[1..597]	[1..597]
gi\|49068996, gi\|... - gi\|71005306\|ref\|XP_757319.1\| hypothetical protein UM01172.1 [Ustilago maydis 521], ref\|XP_398787.1\| ...	0.0	[2..578]	[66..654]
SDHA_SCHPO - Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharom... sdh1 - succinate dehydrogenase Sdh1	0.0	[2..578]	[54..641]
gi\|21402559, gi\|... - gi\|65321882\|ref\|ZP_00394841.1\| COG1053: Succinate dehydrogenase/fumarate reductase, flavoprotein sub...	0.0	[1..597]	[1..597]
gi\|33320236 - gi\|33320236\|gb\|AAQ05854.1\| SdhA protein [Cupriavidus necator] gi\|113868591, gi... - gi\|113868591\|ref\|YP_727080.1\| succinate dehydrogenase flavoprotein subunit [Ralstonia eutropha H16],...	0.0	[2..578]	[12..592]

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Predicted Domain #1

Region A:
Residues: [1-597]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGKLIVVGG GLAGLMATIK AAEAGVNVEL FSLVPVKRSH SVCAQGGING AVNTKGEGDS  60
   61 PWIHFDDTIY GGDFLANQPP VKAMCEAAPG IIHLMDRMGV MFNRTEEGLL DFRRFGGTQH 120
  121 HRTAFAGATT GQQLLYALDE QVRRHEVAGL VTKYEGWDFL RAVVDDEGVC RGIVAQDLQT 180
  181 MEIKSFGADA VIMATGGPGI IFGKSTNSII NTGTAASAVY QQGAYYANGE FIQIHPTAIP 240
  241 GDDKLRLMSE SARGEGGRVW TYKDGKPWYF LEEKYPAYGN LVPRDIATRE IFDVCVEQKL 300
  301 GINGENMVYL DLSHKDPKEL DIKLGGIIEI YEKFTGDDPR KLPMKIFPAV HYSMGGLWVD 360
  361 YKQMTNIPGL FAAGECDYSM HGGNRLGANS LLSAIYGGMV AGPNAIEYMK GLSKSSDAVS 420
  421 STVYEQNELI ETEKFNNILT LDGNENAYVL HKELGEWMTD NVTVVRENKK LLETDAKIEE 480
  481 LMARYKRINI NDTARWSNQG ASFTRQLANM FELARVITIG AYNRNESRGA HYKPEFPNRD 540
  541 DANFLKTTMA KFEGEGNAPA FHYEDVDISL IKPRKRDYSS KHDVAAKGEE KGDKQHV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	1e7pA
Description:	Fumarate reductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.1697547809338	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	8.87698547678677	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	8.87698547678677	bayes_pls_golite062009
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	6.81299528298802	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	5.74880353813045	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	5.00880700655468	bayes_pls_golite062009
oxidoreductase activity	4.62076392207627	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	3.86336671540719	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.57282017498189	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.50603438449246	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.28982462439281	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	2.16428165652808	bayes_pls_golite062009
electron carrier activity	1.96249176032145	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
binding	1.39406388737457	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.18990628739838	bayes_pls_golite062009
antioxidant activity	1.12347155061135	bayes_pls_golite062009
catalytic activity	1.02941336036162	bayes_pls_golite062009
transporter activity	0.890824576391732	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.798505263716232	bayes_pls_golite062009
transmembrane transporter activity	0.706117386114413	bayes_pls_golite062009
ferredoxin reductase activity	0.61713057030514	bayes_pls_golite062009
oxidoreductase activity, acting on iron-sulfur proteins as donors, NAD or NADP as acceptor	0.61713057030514	bayes_pls_golite062009
ferredoxin-NADP+ reductase activity	0.61713057030514	bayes_pls_golite062009
protein binding	0.527207889250691	bayes_pls_golite062009
FAD binding	0.525342258522943	bayes_pls_golite062009
substrate-specific transporter activity	0.491481205015383	bayes_pls_golite062009
coenzyme binding	0.48211536331404	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	0.26114823844682	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: