YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259158, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	509 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259158, gi|....

Description	E-value	Query Range	Subject Range
SDHA_SCHPO - Probable succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial OS=Schizosaccharom... sdh1 - succinate dehydrogenase Sdh1	0.0	[3..505]	[54..608]
gi\|52141075, gi\|... - gi\|52141075\|ref\|YP_085754.1\| L-aspartate oxidase [Bacillus cereus E33L], gi\|51974544\|gb\|AAU16094.1\| ...	0.0	[1..509]	[1..509]
gi\|49481520, gi\|... - gi\|49481520\|ref\|YP_038481.1\| L-aspartate oxidase [Bacillus thuringiensis serovar konkukian str. 97-2...	0.0	[1..509]	[1..509]
gi\|49068996, gi\|... - gi\|71005306\|ref\|XP_757319.1\| hypothetical protein UM01172.1 [Ustilago maydis 521], ref\|XP_398787.1\| ...	0.0	[3..505]	[66..620]
gi\|59712701, gi\|... - gi\|59712701\|ref\|YP_205477.1\| L-aspartate oxidase [Vibrio fischeri ES114], gi\|59480802\|gb\|AAW86589.1\|...	0.0	[3..503]	[19..546]
gi\|47556651, gi\|... - gi\|47566621\|ref\|ZP_00237443.1\| L-aspartate oxidase [Bacillus cereus G9241], gi\|47556651\|gb\|EAL14983....	0.0	[1..509]	[1..509]
gi\|34499385, gi\|... - gi\|34499385\|ref\|NP_903600.1\| L-aspartate oxidase [Chromobacterium violaceum ATCC 12472], gi\|34105237...	0.0	[1..503]	[1..523]
gi\|33320236 - gi\|33320236\|gb\|AAQ05854.1\| SdhA protein [Cupriavidus necator] gi\|113868591, gi... - gi\|113868591\|ref\|YP_727080.1\| succinate dehydrogenase flavoprotein subunit [Ralstonia eutropha H16],...	0.0	[3..507]	[12..568]
gi\|42783561, gi\|... - gi\|42783561\|ref\|NP_980808.1\| L-aspartate oxidase [Bacillus cereus ATCC 10987], gi\|42739490\|gb\|AAS434...	0.0	[1..509]	[1..509]
gi\|152984192, gi... - gi\|94418135\|ref\|ZP_01297951.1\| hypothetical protein PaerP_01000286 [Pseudomonas aeruginosa PA7], gi\|...	0.0	[3..503]	[6..533]

Back

Predicted Domain #1

Region A:
Residues: [1-509]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSADVLIIG SGIAALRVAK EICHEKNVII ITKETNRNNN THLAQGGIAA AVATYDNPND  60
   61 HFEDTLVAGC RYNNEDVVRY LVEEGPKEMK NLIENGMQFD GDETGPHLGK EGAHRKRRIL 120
  121 HAGGDATGKN LLEHFIQEVV PHVTVVEQEM VLDFIIESEK CVGVLTRNSE GKLKRYDADY 180
  181 TVLASGGVGG LYAFTSNDKT ITGDGLAMVY RAGGELVDLE FVQFHPTMLY AGGQCCGLVS 240
  241 EAVRGEGAVL INGKGQRFMM DIHDDYDLAP RDVVARAIHE QLLSGEKVYL NIGSIQNFQE 300
  301 RFPTVSALCK KNGVDITKKR IPVVPGAHFH MGGVKTNIDG ETSIPNLYAV GEVACNGVHG 360
  361 ANRLASNSLL EGLVFGKRIG QHILTKATKD KLNDFAEKEK KFIVLNHLPT KEEIQECMMK 420
  421 YVGIVRTEQS LSYAKRWLSK YGVRNMILQH DALTNEEITL INMLTVCELI VVSALQREES 480
  481 IGGHYRSDYP HRNSAQKEII RVKRKLQLV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	1chuA
Description:	L-aspartate oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
succinate dehydrogenase activity	10.1355816274563	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor	8.87698547678677	bayes_pls_golite062009
succinate dehydrogenase (ubiquinone) activity	8.87698547678677	bayes_pls_golite062009
L-aspartate oxidase activity	7.97437641217089	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-CH group of donors	7.4746833070215	bayes_pls_golite062009
aspartate oxidase activity	7.32727957948448	bayes_pls_golite062009
oxidoreductase activity	6.1068533307878	bayes_pls_golite062009
oxidoreductase activity, acting on NADH or NADPH	5.74880353813045	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor	5.00880700655468	bayes_pls_golite062009
electron carrier activity	2.8553929424231	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	2.57282017498189	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	2.50603438449246	bayes_pls_golite062009
cation transmembrane transporter activity	2.3998060954585	bayes_pls_golite062009
ion transmembrane transporter activity	2.35426029070392	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	2.28982462439281	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	2.26549080531565	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	2.19095357354283	bayes_pls_golite062009
substrate-specific transporter activity	2.17217047087399	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	2.16428165652808	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	2.11247286526577	bayes_pls_golite062009
dihydrolipoyl dehydrogenase activity	1.91979117253135	bayes_pls_golite062009
catalytic activity	1.75556359035561	bayes_pls_golite062009
binding	1.41440014472974	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH2 group of donors	0.798505263716232	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	0.689874846468951	bayes_pls_golite062009
fumarate reductase (NADH) activity	0.65260793370113	bayes_pls_golite062009
transferase activity	0.565295320107724	bayes_pls_golite062009
FAD binding	0.503028015880333	bayes_pls_golite062009
succinate-CoA ligase activity	0.468246082354334	bayes_pls_golite062009
protein binding	0.159209309982354	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: