YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30259137, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	779 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30259137, gi|....

Description	E-value	Query Range	Subject Range
gi\|42739468, gi\|... - gi\|42783539\|ref\|NP_980786.1\| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus ATCC 109...	0.0	[1..779]	[1..779]
gi\|52141097, gi\|... - gi\|52141097\|ref\|YP_085732.1\| single-stranded-DNA-specific exonuclease [Bacillus cereus E33L], gi\|519...	0.0	[1..779]	[1..779]
gi\|49481496, gi\|... - gi\|49481496\|ref\|YP_038459.1\| single-stranded-DNA-specific exonuclease [Bacillus thuringiensis serova...	0.0	[1..779]	[1..779]
gi\|21402452, gi\|... - gi\|65321775\|ref\|ZP_00394734.1\| COG0608: Single-stranded DNA-specific exonuclease [Bacillus anthracis...	0.0	[1..779]	[1..779]
gi\|47556628, gi\|... - gi\|47566598\|ref\|ZP_00237420.1\| single-stranded-DNA-specific exonuclease RecJ [Bacillus cereus G9241]...	0.0	[2..779]	[19..796]
gi\|74491941, gi\|... - gi\|75760572\|ref\|ZP_00740605.1\| Single-stranded-DNA-specific exonuclease recJ [Bacillus thuringiensis...	0.0	[2..779]	[19..796]
gi\|30022484, gi\|... - gi\|30022484\|ref\|NP_834115.1\| single-stranded-DNA-specific exonuclease recJ [Bacillus cereus ATCC 145...	0.0	[1..779]	[1..779]
gi\|89153421, gi\|... - gi\|89208652\|ref\|ZP_01187147.1\| RecJ exonuclease [Bacillus weihenstephanensis KBAB4], gi\|89153421\|gb\|...	0.0	[1..773]	[1..773]
gi\|152025579, gi... - gi\|89201352\|ref\|ZP_01180093.1\| RecJ exonuclease [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|89...	0.0	[1..778]	[1..778]
RECJ_BACSU - Single-stranded-DNA-specific exonuclease RecJ OS=Bacillus subtilis (strain 168) GN=recJ PE=3 SV=1 RECJ_BACSU - Single-stranded-DNA-specific exonuclease recJ OS=Bacillus subtilis GN=recJ PE=3 SV=1 gi\|221324226 - gi\|221324226\|ref\|ZP_03605520.1\| hypothetical protein BsubsS_15062 [Bacillus subtilis subsp. subtilis... gi\|221319945 - gi\|221319945\|ref\|ZP_03601239.1\| hypothetical protein BsubsJ_14918 [Bacillus subtilis subsp. subtilis... gi\|221315024 - gi\|221315024\|ref\|ZP_03596829.1\| hypothetical protein BsubsN3_15007 [Bacillus subtilis subsp. subtili...	0.0	[1..770]	[1..773]

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Predicted Domain #1

Region A:
Residues: [1-563]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQPKTRWKE KEYNGERVSE LASKLQLSPL VVSLFLGRGL DTEDKILDFL NTENQEFHDP  60
   61 FLLEGMDRTV ERVNKAIQNG EQILIFGDYD ADGVSSTTVL YLALQELGAD VEFYIPNRFT 120
  121 EGYGPNEEAF RWAHSAGFSL IITVDTGIAA VHEAKVAKEL GIDLIITDHH EPPPELPEAL 180
  181 AIIHPKLDGG VYPFHYLAGV GVAFKVAHAL LGRVPEHLLE IAVIGTVADL VSLHGENRLL 240
  241 VKRGLKHMRM TKNIGLKALF KVANVSQSEI TEESIGFSIA PRINAVGRLE DATLAVHLLL 300
  301 SEDPEEAKEL AEEIDELNKL RKDIVKQITE EAIAEVENNF PPEENKVLVL AKEGWNPGVI 360
  361 GIVASKLVER FYRPTIVLCI DPVKETAKGS ARSIAGFDLF ANLSDCRELL PHFGGHPMAA 420
  421 GMTLHMNDVD ELRRRLNEQA EEILTEEDFI PITAVDAFCK VEDVTLAAIE DMQKLAPFGV 480
  481 GNPKPRIAVK DAELESIRAI GSDGSHLKMA LRDGQATLDT IGFGFGAYAK EISPVAKVSV 540
  541 IGEASINEWN NFKKPQLMVK DIA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	97.39794
Match:	1ir6A
Description:	Exonuclease RecJ
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [564-779]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEAWQLFDWR SMRNVEANVA ELPKEKITMV YFSKEVLHKF SLEDYKEHMM HASEVTELDE  60
   61 QYIVLLDLPK GTDELRDLFK VGFPSRIYTL FYQENNHLFS TVPTRDHFKW YYSFLSQKSP 120
  121 FSLRQYGEQL CQHKGWSKDT VNFMTQVFFE LEFVTIKDGV IFMADKKQKR DLIESNTYRE 180
  181 KMNHLQLEKE LVYSTYQQLY TWFETIRNHK EVEQLG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits