YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264450, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	212 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264450, gi|....

Description	E-value	Query Range	Subject Range
gi\|21619828, gi\|... - gi\|21619828\|gb\|AAH33078.1\| UCKL1 protein [Homo sapiens], gi\|119595593\|gb\|EAW75187.1\| uridine-cytidin...	6.0E-48	[3..208]	[95..302]
UKL2_ARATH - Uridine kinase-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=UKL2 PE=2 SV=1	7.0E-48	[3..209]	[59..266]
gi\|68436585 - gi\|68436585\|ref\|XP_699134.1\| PREDICTED: similar to Uridine/cytidine kinase-like 1 [Danio rerio]	8.0E-48	[4..209]	[144..351]
gi\|42407979, gi\|... - gi\|50947885\|ref\|XP_483470.1\| putative uridine kinase/uracil phosphoribosyltransferase [Oryza sativa ...	9.0E-48	[2..209]	[67..275]
gi\|76611769 - gi\|76611769\|ref\|XP_614178.2\| PREDICTED: similar to uridine-cytidine kinase 2 [Bos taurus]	2.0E-47	[2..207]	[233..447]
gi\|109469352, gi... - gi\|109471464\|ref\|XP_001056276.1\| PREDICTED: similar to Uridine/cytidine kinase-like 1 isoform 1 [Rat...	4.0E-47	[3..209]	[79..287]

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Predicted Domain #1

Region A:
Residues: [1-212]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTNKPVVIG IAGGSGSGKT SVTKAIFDHF KGHSILILEQ DYYYKDQSHL PMEERLKTNY  60
   61 DHPLAFDNDL LIEHLQQLLA YKQVDKPVYD YTLHTRSEEI IPVEPKDVII LEGILILEDP 120
  121 RLCELMDIKL FVDTDADLRI LRRMQRDIKE RGRTMDSVID QYVNVVRPMH NQFIEPSKKF 180
  181 ADIIIPEGGQ NHVAIDSMVT KIATILEQKV NL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.0
Match:	1udwA
Description:	Crystal structure of human uridine-cytidine kinase 2 complexed with a feedback-inhibitor, CTP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
nucleobase, nucleoside, nucleotide kinase activity	3.31021342806183	bayes_pls_golite062009
nucleotide kinase activity	2.24094813695083	bayes_pls_golite062009
phosphotransferase activity, phosphate group as acceptor	1.96697952975573	bayes_pls_golite062009
kinase activity	1.60827037072506	bayes_pls_golite062009
binding	1.25659194713805	bayes_pls_golite062009
catalytic activity	1.00104173493322	bayes_pls_golite062009
hydrolase activity	0.420858111948277	bayes_pls_golite062009
adenylate kinase activity	0.373057703057608	bayes_pls_golite062009
nucleic acid binding	0.216266069700019	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: