YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264370, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	301 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264370, gi|....

Description	E-value	Query Range	Subject Range
gi\|89208393, gi\|... - gi\|89208393\|ref\|ZP_01186902.1\| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era ...	3.0E-64	[1..301]	[1..301]
gi\|47555541, gi\|... - gi\|47567864\|ref\|ZP_00238572.1\| GTP-binding protein Era [Bacillus cereus G9241], gi\|47555541\|gb\|EAL13...	5.0E-64	[1..301]	[1..301]
gi\|221241803, gi... - gi\|222097745\|ref\|YP_002531802.1\| GTP-binding protein [Bacillus cereus Q1], gi\|221241803\|gb\|ACM14513.... gi\|218905437, gi... - gi\|218905437\|ref\|YP_002453271.1\| GTP-binding protein Era [Bacillus cereus AH820], gi\|218535830\|gb\|AC... gi\|217961790, gi... - gi\|217961790\|ref\|YP_002340360.1\| GTP-binding protein Era [Bacillus cereus AH187], gi\|217063790\|gb\|AC... gi\|225866281, gi... - gi\|225866281\|ref\|YP_002751659.1\| GTP-binding protein Era [Bacillus cereus 03BB102], gi\|225786790\|gb\|... gi\|206743373, gi... - gi\|206978417\|ref\|ZP_03239286.1\| GTP-binding protein Era [Bacillus cereus H3081.97], gi\|206743373\|gb\|... gi\|196022790, gi... - gi\|196046320\|ref\|ZP_03113546.1\| GTP-binding protein Era [Bacillus cereus 03BB108], gi\|196022790\|gb\|E... gi\|196039186, gi... - gi\|196039186\|ref\|ZP_03106492.1\| GTP-binding protein Era [Bacillus cereus NVH0597-99], gi\|196029813\|g... gi\|195992923, gi... - gi\|196034381\|ref\|ZP_03101790.1\| GTP-binding protein Era [Bacillus cereus W], gi\|195992923\|gb\|EDX5688... gi\|254721891 - gi\|254721891\|ref\|ZP_05183680.1\| GTP-binding protein Era [Bacillus anthracis str. A1055] gi\|51974671, gi\|... - gi\|52141202\|ref\|YP_085626.1\| GTP-binding protein Era [Bacillus cereus E33L], gi\|51974671\|gb\|AAU16221... gi\|42783426, gi\|... - gi\|42783426\|ref\|NP_980673.1\| GTP-binding protein Era [Bacillus cereus ATCC 10987], gi\|42739355\|gb\|AA... gi\|49332867, gi\|... - gi\|49481311\|ref\|YP_038355.1\| GTP-binding protein Era [Bacillus thuringiensis serovar konkukian str. ... gi\|118418694, gi... - gi\|118479469\|ref\|YP_896620.1\| GTP-binding protein Era [Bacillus thuringiensis str. Al Hakam], gi\|118...	6.0E-64	[1..301]	[1..301]
gi\|218232187, gi... - gi\|218232187\|ref\|YP_002369107.1\| GTP-binding protein Era [Bacillus cereus B4264], gi\|218160144\|gb\|AC... gi\|29897936, gi\|... - gi\|30022378\|ref\|NP_834009.1\| GTP-binding protein Era [Bacillus cereus ATCC 14579], gi\|29897936\|gb\|AA...	1.0E-63	[1..301]	[1..301]
gi\|75761897, gi\|... - gi\|75761897\|ref\|ZP_00741822.1\| GTP-binding protein era [Bacillus thuringiensis serovar israelensis A... gi\|218899466, gi... - gi\|218899466\|ref\|YP_002447877.1\| GTP-binding protein Era [Bacillus cereus G9842], gi\|218541393\|gb\|AC...	1.0E-63	[1..301]	[1..301]
gi\|89150193, gi\|... - gi\|89201815\|ref\|ZP_01180550.1\| Small GTP-binding protein domain:GTP-binding:GTP-binding protein Era ...	2.0E-63	[1..301]	[1..301]
gi\|98659991 - gi\|98659991\|dbj\|GAA02688.1\| unnamed protein product [Pelotomaculum thermopropionicum SI]	3.0E-63	[4..300]	[10..306]
gi\|56421023, gi\|... - gi\|56421023\|ref\|YP_148341.1\| GTP-binding protein [Geobacillus kaustophilus HTA426], gi\|56380865\|dbj\|...	2.0E-62	[1..301]	[1..302]
ERA_LACPL - GTPase Era OS=Lactobacillus plantarum GN=era PE=3 SV=1 ERA_LACPL - GTPase Era OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=era PE=3 SV=1 gi\|254556825, gi... - gi\|254556825\|ref\|YP_003063242.1\| GTP-binding protein Era [Lactobacillus plantarum JDM1], gi\|25404575... gi\|227894900, gi... - gi\|227894900\|ref\|ZP_04012705.1\| GTP-binding protein Era [Lactobacillus plantarum subsp. plantarum AT...	1.0E-61	[1..301]	[1..302]
gi\|52004287, gi\|... - gi\|52786455\|ref\|YP_092284.1\| GTP-binding protein Era [Bacillus licheniformis ATCC 14580], gi\|5234895...	2.0E-61	[1..301]	[1..301]

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Predicted Domain #1

Region A:
Residues: [1-301]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRKGYKSGF VSIIGRPNVG KSTFLNRIIG QKIAIMSDKP QTTRNKIQGV YTENDSQVIF  60
   61 IDTPGIHKPK HKLGDFMVKM AQTTLKEVDI VLFMVNAVEG FGRGEEFIIE KLKETKQPVF 120
  121 LVINKIDQVH PEQLLELIDQ YRKLHDFAEI VPISALDGNN AEALIGTIKK YLPEGPQYYP 180
  181 DNQVTDHPER FIIAELIREK VLHLTREEVP HSVAVVIDAI QKREGGAVYI NATIVVERPS 240
  241 QKGIIIGKQG KMLKEVGKRA RFDIEALLGS KVFLEVWVKV QKDWRNKMSQ LRDLGFREDE 300
  301 Y

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.045757
Match:	1egaA
Description:	GTPase Era, N-terminal domain; GTPase Era C-terminal domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
transcription regulator activity	0.74089985308964	bayes_pls_golite062009
catalytic activity	0.471337605075652	bayes_pls_golite062009
binding	0.437847571554934	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: