YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30264255, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30264255, gi|....

Description	E-value	Query Range	Subject Range
gi\|229047876, gi... - gi\|229047876\|ref\|ZP_04193452.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus AH676], gi\|228... EX7L_BACCR - Exodeoxyribonuclease 7 large subunit OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBR... gi\|228967221, gi... - gi\|228967221\|ref\|ZP_04128257.1\| Exodeoxyribonuclease 7 large subunit [Bacillus thuringiensis serovar... gi\|228805123, gi... - gi\|228954466\|ref\|ZP_04116491.1\| Exodeoxyribonuclease 7 large subunit [Bacillus thuringiensis serovar... gi\|228836706, gi... - gi\|228922935\|ref\|ZP_04086229.1\| Exodeoxyribonuclease 7 large subunit [Bacillus thuringiensis serovar... gi\|206734137, gi... - gi\|206971365\|ref\|ZP_03232316.1\| exodeoxyribonuclease VII, large subunit [Bacillus cereus AH1134], gi... gi\|228636583, gi... - gi\|229146755\|ref\|ZP_04275120.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus BDRD-ST24], gi... EX7L_BACC2 - Exodeoxyribonuclease 7 large subunit OS=Bacillus cereus (strain G9842) GN=xseA PE=3 SV=1 gi\|229129460, gi... - gi\|229129460\|ref\|ZP_04258431.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus BDRD-Cer4], gi... gi\|228701854, gi... - gi\|229081439\|ref\|ZP_04213939.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus Rock4-2], gi\|2... gi\|228711418, gi... - gi\|229071687\|ref\|ZP_04204903.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus F65185], gi\|22... gi\|229180460, gi... - gi\|229180460\|ref\|ZP_04307802.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus 172560W], gi\|2...	0.0	[1..452]	[1..452]
EX7L_BACHK - Exodeoxyribonuclease 7 large subunit OS=Bacillus thuringiensis subsp. konkukian GN=xseA PE=3 SV=1 EX7L_BACC0 - Exodeoxyribonuclease 7 large subunit OS=Bacillus cereus (strain AH820) GN=xseA PE=3 SV=1 gi\|196046399, gi... - gi\|196046399\|ref\|ZP_03113625.1\| exodeoxyribonuclease VII, large subunit [Bacillus cereus 03BB108], g... gi\|229186423, gi... - gi\|229186423\|ref\|ZP_04313587.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus BGSC 6E1], gi\|... gi\|228830516, gi... - gi\|228929226\|ref\|ZP_04092253.1\| Exodeoxyribonuclease 7 large subunit [Bacillus thuringiensis serovar... EX7L_BACCZ - Exodeoxyribonuclease 7 large subunit OS=Bacillus cereus (strain ZK / E33L) GN=xseA PE=3 SV=1 gi\|228659835, gi... - gi\|229123700\|ref\|ZP_04252895.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus 95/8201], gi\|2... gi\|229093239, gi... - gi\|229093239\|ref\|ZP_04224357.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus Rock3-42], gi\|... EX7L_BACAH - Exodeoxyribonuclease 7 large subunit OS=Bacillus thuringiensis (strain Al Hakam) GN=xseA PE=3 SV=1 gi\|228947897, gi... - gi\|228947897\|ref\|ZP_04110184.1\| Exodeoxyribonuclease 7 large subunit [Bacillus thuringiensis serovar... EX7L_BACHK - Exodeoxyribonuclease 7 large subunit OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=xs... gi\|228935503, gi... - gi\|228935503\|ref\|ZP_04098321.1\| Exodeoxyribonuclease 7 large subunit [Bacillus thuringiensis serovar...	0.0	[1..452]	[1..452]
gi\|229140914, gi... - gi\|229140914\|ref\|ZP_04269458.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus BDRD-ST26], gi... gi\|228585186, gi... - gi\|229198307\|ref\|ZP_04325014.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus m1293], gi\|228... gi\|228625736, gi... - gi\|229157779\|ref\|ZP_04285854.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus ATCC 4342], gi... gi\|47553854, gi\|... - gi\|47569439\|ref\|ZP_00240120.1\| exodeoxyribonuclease VII, large subunit [Bacillus cereus G9241], gi\|4... EX7L_BACC1 - Exodeoxyribonuclease 7 large subunit OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=xseA PE=3 S... EX7L_BACC7 - Exodeoxyribonuclease 7 large subunit OS=Bacillus cereus (strain AH187) GN=xseA PE=3 SV=1 EX7L_BACCQ - Exodeoxyribonuclease 7 large subunit OS=Bacillus cereus (strain Q1) GN=xseA PE=3 SV=1	0.0	[1..452]	[1..452]
gi\|228717431, gi... - gi\|229061870\|ref\|ZP_04199200.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus AH603], gi\|228... gi\|229013398, gi... - gi\|229013398\|ref\|ZP_04170535.1\| Exodeoxyribonuclease 7 large subunit [Bacillus mycoides DSM 2048], g... gi\|228614516, gi... - gi\|229168924\|ref\|ZP_04296641.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus AH621], gi\|228... gi\|229135002, gi... - gi\|229135002\|ref\|ZP_04263808.1\| Exodeoxyribonuclease 7 large subunit [Bacillus cereus BDRD-ST196], g... EX7L_BACWK - Exodeoxyribonuclease 7 large subunit OS=Bacillus weihenstephanensis (strain KBAB4) GN=xseA PE=3 SV=1	0.0	[1..452]	[1..452]
EX7L_BACCN - Exodeoxyribonuclease 7 large subunit OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98...	0.0	[1..451]	[1..451]
gi\|30042156, gi\|... - gi\|30063901\|ref\|NP_838072.1\| exodeoxyribonuclease VII large subunit [Shigella flexneri 2a str. 2457T... EX7L_SHIFL - Exodeoxyribonuclease 7 large subunit OS=Shigella flexneri GN=xseA PE=3 SV=4 gi\|56383673, gi\|... - gi\|56480122\|ref\|NP_708348.2\| exodeoxyribonuclease VII large subunit [Shigella flexneri 2a str. 301],...	0.0	[5..452]	[9..454]
EX7L_SHIBS - Exodeoxyribonuclease 7 large subunit OS=Shigella boydii serotype 4 (strain Sb227) GN=xseA PE=3 SV=1	0.0	[5..452]	[9..454]
gi\|124498698, gi... - gi\|124531252\|ref\|ZP_01701594.1\| exodeoxyribonuclease VII, large subunit [Escherichia coli B], gi\|124... EX7L_ECOHS - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli O9:H4 (strain HS) GN=xseA PE=3 SV=1 EX7L_ECOLC - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=x...	0.0	[5..452]	[9..454]
EX7L_SHISS - Exodeoxyribonuclease 7 large subunit OS=Shigella sonnei (strain Ss046) GN=xseA PE=3 SV=1 gi\|192958322, gi... - gi\|75237745\|ref\|ZP_00721761.1\| COG1570: Exonuclease VII, large subunit [Escherichia coli E110019], g... gi\|75229159, gi\|... - gi\|75229159\|ref\|ZP_00715731.1\| COG1570: Exonuclease VII, large subunit [Escherichia coli B7A], gi\|19... EX7L_SHIB3 - Exodeoxyribonuclease 7 large subunit OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=... EX7L_ECO8A - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli O8 (strain IAI1) GN=xseA PE=3 SV=1 EX7L_ECO55 - Exodeoxyribonuclease 7 large subunit OS=Escherichia coli (strain 55989 / EAEC) GN=xseA PE=3 SV=1	0.0	[5..452]	[9..454]
EX7L_SHIF8 - Exodeoxyribonuclease 7 large subunit OS=Shigella flexneri serotype 5b (strain 8401) GN=xseA PE=3 SV=...	0.0	[5..452]	[9..454]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKQYLTVTA LTRYIKTKIE YDPHLQSVWL KGEISNFKNH SRGHMYFTLK DENARIAAVM  60
   61 FAGHNRNIKF RPENGMKVLV KGKISVYEAS GSYQIYIQDM QPDGIGNLHL AYEQLKVRLE 120
  121 EEGLFSQVYK KTIPPYAKTI GVITSPTGAA IRDIITTIKR RYPIGNVIVF PVLVQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	13.744727
Match:	PF01336.16
Description:	No description for PF01336.16 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.562	0.585	exonuclease activity	c.47.1	Thioredoxin-like
View	Download	0.683	0.076	DNA catabolic process	c.23.1	CheY-like
View	Download	0.556	0.017	DNA catabolic process	d.198.1	Type III secretory system chaperone
View	Download	0.515	N/A	N/A	c.23.1	CheY-like
View	Download	0.506	N/A	N/A	c.23.1	CheY-like

Predicted Domain #2

Region A:
Residues: [176-249]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GESAAPSIVQ AIRTANEMEE IDVLIVGRGG GSIEELWAFN EEMVARAIFK SEIPIISAVG  60
   61 HETDFTIADF VADL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [250-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RAPTPTAAAE LAAPNIIELQ EKVLQRTLRL QRAMRELVHK KEEKLQVLQK SYAFRYPRQV  60
   61 YEQKEEQLDR ALEQLVLAKE RYIDKKVNQL KQLSFYLEKH HPSQKIMQTK VAVETLQKQL 120
  121 QREMQTLLQA KEFAFVRAAQ KLEALSPLKV MMRGYGLVYD EEKQVLKSVK DVSLGDAVSV 180
  181 QLQDGILDCS VSGIEERELN NGK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	8.221849
Match:	1rw6A
Description:	human APP core domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.7871201389646	bayes_pls_golite062009
protein binding	1.17121102134656	bayes_pls_golite062009
nucleic acid binding	0.521010838154847	bayes_pls_golite062009
DNA binding	0.440048609314838	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: