YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30258640, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	376 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258640, gi|....

Description	E-value	Query Range	Subject Range
gi\|89148529, gi\|... - gi\|89203475\|ref\|ZP_01182135.1\| Phage integrase [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|891...	1.0E-64	[1..375]	[1..375]
gi\|254744545 - gi\|254744545\|ref\|ZP_05202224.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|254756197 - gi\|254756197\|ref\|ZP_05208226.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|49183443, gi\|... - gi\|49183443\|ref\|YP_026695.1\| prophage LambdaBa04, site-specific recombinase phage integrase family p... gi\|254762016 - gi\|254762016\|ref\|ZP_05213865.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|47500852, gi\|... - gi\|47525704\|ref\|YP_017053.1\| prophage lambdaba04, site-specific recombinase phage integrase family p... gi\|164713595, gi... - gi\|165870761\|ref\|ZP_02215414.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|167641265, gi... - gi\|167641265\|ref\|ZP_02399518.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|167529819, gi... - gi\|167634745\|ref\|ZP_02393064.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|30260592, gi\|... - gi\|30260592\|ref\|NP_842969.1\| prophage LambdaBa04, site-specific recombinase phage integrase family p... gi\|21398380, gi\|... - gi\|65317857\|ref\|ZP_00390816.1\| COG0582: Integrase [Bacillus anthracis str. A2012], ref\|NP_654365.1\| ... gi\|170707193, gi... - gi\|170707193\|ref\|ZP_02897649.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|170688998, gi... - gi\|170688998\|ref\|ZP_02880199.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|190567522, gi... - gi\|190567522\|ref\|ZP_03020435.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|172080665, gi... - gi\|177654553\|ref\|ZP_02936409.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|227813101, gi... - gi\|227813101\|ref\|YP_002813110.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fam... gi\|229268766, gi... - gi\|229604358\|ref\|YP_002865039.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fam... gi\|254686817 - gi\|254686817\|ref\|ZP_05150675.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|254724891 - gi\|254724891\|ref\|ZP_05186674.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami... gi\|254738957 - gi\|254738957\|ref\|ZP_05196659.1\| prophage LambdaBa04, site-specific recombinase, phage integrase fami...	3.0E-61	[2..361]	[3..374]
gi\|83573545, gi\|... - gi\|83590631\|ref\|YP_430640.1\| Phage integrase [Moorella thermoacetica ATCC 39073], gi\|83573545\|gb\|ABC...	4.0E-57	[3..372]	[12..386]
gi\|31415821 - gi\|31415821\|ref\|NP_852561.1\| DNA integration/recombination/invertion protein [Bacillus phage phBC6A5... gi\|29896235, gi\|... - gi\|30020683\|ref\|NP_832314.1\| DNA integration/recombination/invertion protein [Bacillus cereus ATCC 1... gi\|228655527, gi... - gi\|229127965\|ref\|ZP_04256949.1\| DNA integration/recombination/invertion protein [Bacillus cereus BDR...	4.0E-56	[4..359]	[5..367]
gi\|241883263, gi... - gi\|241904345\|ref\|ZP_04789046.1\| integrase family protein [Thermoanaerobacter brockii subsp. finnii A... gi\|166857459, gi... - gi\|76796670\|ref\|ZP_00779026.1\| Phage integrase [Thermoanaerobacter ethanolicus ATCC 33223], gi\|76587...	9.0E-56	[4..360]	[5..372]
gi\|125974940, gi... - gi\|67916417\|ref\|ZP_00510128.1\| Phage integrase [Clostridium thermocellum ATCC 27405], gi\|67849610\|gb...	3.0E-54	[4..358]	[5..367]
gi\|11094395 - gi\|11094395\|gb\|AAG29618.1\| integrase-like protein [Staphylococcus aureus] gi\|82750103, gi\|... - gi\|82750103\|ref\|YP_415844.1\| integrase [Staphylococcus aureus RF122], gi\|82655634\|emb\|CAI80030.1\| pr...	7.0E-54	[3..360]	[5..377]
gi\|89204502, gi\|... - gi\|89204502\|ref\|ZP_01183079.1\| Phage integrase [Bacillus weihenstephanensis KBAB4], gi\|89157563\|gb\|E...	2.0E-53	[4..359]	[7..370]
gi\|29377419, gi\|... - gi\|29377419\|ref\|NP_816573.1\| phage integrase family site specific recombinase [Enterococcus faecalis...	6.0E-53	[3..359]	[7..379]
gi\|78045014, gi\|... - gi\|78045014\|ref\|YP_360522.1\| prophage LambdaCh01, site-specific recombinase phage integrase family p...	5.0E-52	[4..359]	[5..368]

Back

Predicted Domain #1

Region A:
Residues: [1-376]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAYFRKRGEK WSFTMDVGKD PITGKRKQIT KGGFKTKKAA QEEVARVTND LANGDYENSD  60
   61 IRFSQLVEIW TQEKESSCRP STLYQYKRIL RSRVMPEFGE KRLSDIKPLS VHNFHQKLLK 120
  121 EGLTTKYISS VDVMLKQILD KGVELEMINS NPAKKAKRPK VKKKAQASWT VEEAMKFMEY 180
  181 AKIQGSYYIA FVLALHTGMR IGEVLALQWK DINFESKVIH VQRTLTLVDG KYELGETKTE 240
  241 ASNRMIPMTQ ELMRELLEYQ SHKKDNSFDL LICTRNKKIV HPYTIRYQMK ALCEAIDVPY 300
  301 IRFHDIRRTF TTILIDSGAN AKVVSKLLGH TNVSTTLNIY TDVYEERQIE VTEMLGNVLK 360
  361 SGRSGQKVVS EEKQED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.30103
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	4.99325011803106	bayes_pls_golite062009
integrase activity	3.60695091575172	bayes_pls_golite062009
catalytic activity	2.22520758916604	bayes_pls_golite062009
structure-specific DNA binding	0.11292854906722	bayes_pls_golite062009
DNA binding	0.10970863758177	bayes_pls_golite062009
nucleic acid binding	0.06580979261817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: