YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263858, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	682 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263858, gi|....

Description	E-value	Query Range	Subject Range
gi\|51975109, gi\|... - gi\|52141640\|ref\|YP_085196.1\| ATP-dependent DNA helicase [Bacillus cereus E33L], gi\|51975109\|gb\|AAU16...	0.0	[1..682]	[1..682]
gi\|42738874, gi\|... - gi\|42782947\|ref\|NP_980194.1\| ATP-dependent DNA helicase RecG [Bacillus cereus ATCC 10987], gi\|427388...	0.0	[1..682]	[1..682]
gi\|228960071, gi... - gi\|228960071\|ref\|ZP_04121735.1\| ATP-dependent DNA helicase recG [Bacillus thuringiensis serovar paki... gi\|30021943, gi\|... - gi\|30021943\|ref\|NP_833574.1\| ATP-dependent DNA helicase recG [Bacillus cereus ATCC 14579], gi\|298974... gi\|228637059, gi... - gi\|229146426\|ref\|ZP_04274797.1\| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-ST24], gi\|2286... gi\|228654368, gi... - gi\|229129131\|ref\|ZP_04258104.1\| ATP-dependent DNA helicase recG [Bacillus cereus BDRD-Cer4], gi\|2286... gi\|228672102, gi... - gi\|229111326\|ref\|ZP_04240879.1\| ATP-dependent DNA helicase recG [Bacillus cereus Rock1-15], gi\|22867... gi\|229047542, gi... - gi\|229047542\|ref\|ZP_04193132.1\| ATP-dependent DNA helicase recG [Bacillus cereus AH676], gi\|22872378... gi\|229152054, gi... - gi\|229152054\|ref\|ZP_04280249.1\| ATP-dependent DNA helicase recG [Bacillus cereus m1550], gi\|22863140...	0.0	[1..682]	[1..682]
gi\|89208817, gi\|... - gi\|89208817\|ref\|ZP_01187302.1\| ATP-dependent DNA helicase RecG [Bacillus weihenstephanensis KBAB4], ...	0.0	[1..682]	[4..685]
gi\|89086654, gi\|... - gi\|89098692\|ref\|ZP_01171574.1\| ATP-dependent DNA helicase RecG [Bacillus sp. NRRL B-14911], gi\|89086...	0.0	[4..682]	[1..679]
gi\|52080190, gi\|... - gi\|52785567\|ref\|YP_091396.1\| hypothetical protein BLi01808 [Bacillus licheniformis ATCC 14580], gi\|5...	0.0	[1..681]	[1..681]
gi\|25290824 - pir\|\|G83961 ATP-dependent DNA helicase recG [imported] - Bacillus halodurans (strain C-125) gi\|10175115, gi\|... - gi\|15615058\|ref\|NP_243361.1\| ATP-dependent DNA helicase [Bacillus halodurans C-125], gi\|10175115\|dbj...	0.0	[11..682]	[2..673]
RECG_BACSU - ATP-dependent DNA helicase recG OS=Bacillus subtilis GN=recG PE=3 SV=1 gi\|221322982 - gi\|221322982\|ref\|ZP_03604276.1\| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis s... gi\|221318711 - gi\|221318711\|ref\|ZP_03600005.1\| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis s... gi\|221313787 - gi\|221313787\|ref\|ZP_03595592.1\| ATP-dependent DNA helicase RecG [Bacillus subtilis subsp. subtilis s... RECG_BACSU - ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) GN=recG PE=3 SV=1	0.0	[1..681]	[1..681]
gi\|133734879, gi... - gi\|254933283\|ref\|ZP_05266642.1\| ATP-dependent DNA helicase RecG [Listeria monocytogenes HPB2262], gi... gi\|254826147 - gi\|254826147\|ref\|ZP_05231148.1\| ATP-dependent DNA helicase RecG [Listeria monocytogenes FSL J1-194] gi\|46881313, gi\|... - gi\|46908043\|ref\|YP_014432.1\| ATP-dependent DNA helicase RecG [Listeria monocytogenes str. 4b F2365],...	0.0	[1..682]	[1..682]
gi\|16800991 - gi\|16800991\|ref\|NP_471259.1\| hypothetical protein lin1925 [Listeria innocua Clip11262] gi\|25290834, gi\|... - pir\|\|AC1673 ATP-dependent DNA helicase recG homolog lin1925 [imported] - Listeria innocua (strain Cl...	0.0	[1..682]	[1..682]

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Predicted Domain #1

Region A:
Residues: [1-682]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNEVVQVPVT DVKGIGGETS ELLHEMGIYT VSHLLEHFPY RYEDYAMKDL AEVKHDERVT  60
   61 VEGKVHSAPL LQYYGKKKSR LTVRVLVGRY LITAVCFNRP YYKQKLNLDE TVTITGKWDQ 120
  121 HRQTIAVSEL HFGPVVRQQE VEPVYSVKGK LTVKQMRRFI AQALKEYGDS IVEVLPDGLL 180
  181 SRYKLLPRYE ALRALHFPTG QEDLKQARRR FVYEEFFLFQ LKMQTLRKME RENSKGTKKE 240
  241 IPSEELQEFI DALPFPLTGA QRRVVDEIMK DMTSPYRMNR LLQGDVGSGK TVVAAIGLYA 300
  301 AKLAHYQGAL MVPTEILAEQ HYQSLAETFS HFGMKVELLT SSVKGVRRRE ILAKLEQGEI 360
  361 DILVGTHALI QDEVIFHRLG LVITDEQHRF GVAQRRVLRE KGESPDVLFM TATPIPRTLA 420
  421 ITAFGEMDVS IIDEMPAGRK VIETYWAKHD MLDRVLGFVE KEINKGRQAY VICPLIEESE 480
  481 KLDVQNAIDL HSMLTHHYQG KCQVGLMHGR LSSQEKEEIM GQFSENKVQI LVSTTVVEVG 540
  541 VNVPNATVMV IYDAERFGLS QLHQLRGRVG RGSEQSYCLL IADPKSETGK ERMRIMTETN 600
  601 DGFVLSEKDL ELRGPGDFFG SKQSGLPEFK VADMVHDYRA LETARQDAAL LVDSEAFWHN 660
  661 DQYASLRTYL DGTGVFQGEK LD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	102.0
Match:	1gm5A
Description:	RecG, N-terminal domain; RecG "wedge" domain; RecG helicase domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.37148167194523	bayes_pls_golite062009
pyrophosphatase activity	1.16998111465319	bayes_pls_golite062009
binding	0.712909626033412	bayes_pls_golite062009
helicase activity	0.00674361801283974	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: