YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30258484, gi|...
Organism: Bacillus anthracis str. Ames
Length: 257 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30258484, gi|....

Description E-value Query
Range		 Subject
Range
RNH2_BACCR - Ribonuclease HII OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 15305 / NCIMB 9373...
 2.0E-91 [1..257] [1..257]
gi|221323001 - gi|221323001|ref|ZP_03604295.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. SMY]
RNH2_BACSU - Ribonuclease HII OS=Bacillus subtilis (strain 168) GN=rnhB PE=1 SV=1
gi|221313806 - gi|221313806|ref|ZP_03595611.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. NCIB 3610]
RNH2_BACSU - Ribonuclease HII OS=Bacillus subtilis GN=rnhB PE=1 SV=1
gi|221318730 - gi|221318730|ref|ZP_03600024.1| ribonuclease HII [Bacillus subtilis subsp. subtilis str. JH642]
 1.0E-88 [1..254] [1..254]
RNH2_BACHD - Ribonuclease HII OS=Bacillus halodurans GN=rnhB PE=3 SV=2
RNH2_BACHD - Ribonuclease HII OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-...
 1.0E-86 [2..253] [3..255]
gi|47570338, gi|... - gi|47570338|ref|ZP_00240983.1| ribonuclease HII [Bacillus cereus G9241], gi|47553003|gb|EAL11409.1| ...
 2.0E-86 [1..257] [1..257]
RNH2_BACCZ - Ribonuclease HII OS=Bacillus cereus (strain ZK / E33L) GN=rnhB PE=3 SV=1
 5.0E-86 [1..257] [1..257]
RNH2_BACCQ - Ribonuclease HII OS=Bacillus cereus (strain Q1) GN=rnhB PE=3 SV=1
RNH2_BACC1 - Ribonuclease HII OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rnhB PE=3 SV=1
 7.0E-86 [1..257] [1..257]
RNH2_BACAH - Ribonuclease HII OS=Bacillus thuringiensis (strain Al Hakam) GN=rnhB PE=3 SV=1
gi|229186077, gi... - gi|229186077|ref|ZP_04313246.1| Ribonuclease [Bacillus cereus BGSC 6E1], gi|228597253|gb|EEK54904.1|...
RNH2_BACHK - Ribonuclease HII OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rnhB PE=3 SV=1
RNH2_BACC3 - Ribonuclease HII OS=Bacillus cereus (strain 03BB102) GN=rnhB PE=3 SV=1
RNH2_BACHK - Ribonuclease HII OS=Bacillus thuringiensis subsp. konkukian GN=rnhB PE=3 SV=1
 4.0E-85 [1..257] [1..257]
RNH2_STRP3 - Ribonuclease HII OS=Streptococcus pyogenes serotype M3 (strain ATCC BAA-595 / MGAS315) GN=rnhB PE=3 ...
RNH2_STRPQ - Ribonuclease HII OS=Streptococcus pyogenes serotype M3 (strain SSI-1) GN=rnhB PE=3 SV=1
RNH2_STRP3 - Ribonuclease HII OS=Streptococcus pyogenes serotype M3 GN=rnhB PE=3 SV=1
 9.0E-85 [1..254] [1..256]
RNH2_STRMU - Ribonuclease HII OS=Streptococcus mutans GN=rnhB PE=3 SV=1
RNH2_STRMU - Ribonuclease HII OS=Streptococcus mutans serotype c (strain ATCC 700610 / UA159) GN=rnhB PE=3 SV=1
 7.0E-84 [5..257] [3..258]
RNH2_BACLD - Ribonuclease HII OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12200 / NCI...
 1.0E-83 [1..252] [1..252]

Back

Predicted Domain #1
Region A:
Residues: [1-257] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQKVTIQEAE HLLQEIISEE DDRFQILIKD ERKGVQKLIS KWYKQKELAQ KEKEKFLEMS  60
   61 KYENALREKG LTYIAGIDEV GRGPLAGPVV TAAVILPEDF YIPGLNDSKK LSEAKRERFY 120
  121 GEIKAKAIAI GVGIVSPQVI DEINIYQATK QAMLDAIANL SCTPEYLLID AMKLPAPIPQ 180
  181 TSIIKGDAKS ISISAASIIA KVTRDRMMKE LGEKYPAYGF EQHMGYGTKQ HLEAIEAHGV 240
  241 LEEHRKSFAP IKDMIKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 61.0
Match: 2etjA
Description: Crystal structure of Ribonuclease HII (EC 3.1.26.4) (RNase HII) (tm0915) from THERMOTOGA MARITIMA at 1.74 A resolution
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
ribonuclease activity 3.91517707500372 bayes_pls_golite062009
endoribonuclease activity 3.00008907756136 bayes_pls_golite062009
ribonuclease H activity 2.37346218921366 bayes_pls_golite062009
hydrolase activity 2.30893115816458 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 2.26022264830742 bayes_pls_golite062009
nuclease activity 1.81796593394339 bayes_pls_golite062009
endonuclease activity 1.79009816048707 bayes_pls_golite062009
catalytic activity 1.62277843225829 bayes_pls_golite062009
exoribonuclease activity 1.48827607538468 bayes_pls_golite062009
exoribonuclease activity, producing 5'-phosphomonoesters 1.34153791988846 bayes_pls_golite062009
3'-5'-exoribonuclease activity 0.8085201347205 bayes_pls_golite062009
exonuclease activity 0.39213900591465 bayes_pls_golite062009
endoribonuclease activity, producing 5'-phosphomonoesters 0.13187450705887 bayes_pls_golite062009
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle