YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263835, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263835, gi|....

Description	E-value	Query Range	Subject Range
XERC_OCEIH - Tyrosine recombinase XerC OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT... XERC_OCEIH - Tyrosine recombinase xerC OS=Oceanobacillus iheyensis GN=xerC PE=3 SV=1	3.0E-67	[3..299]	[4..300]
gi\|89152781, gi\|... - gi\|89209284\|ref\|ZP_01187725.1\| Tyrosine recombinase XerC [Bacillus weihenstephanensis KBAB4], gi\|891... gi\|229134638, gi... - gi\|229134638\|ref\|ZP_04263448.1\| Tyrosine recombinase xerC [Bacillus cereus BDRD-ST196], gi\|228648899... gi\|228748268, gi... - gi\|229013014\|ref\|ZP_04170179.1\| Tyrosine recombinase xerC [Bacillus mycoides DSM 2048], gi\|228748268... gi\|228614976, gi... - gi\|229168570\|ref\|ZP_04296293.1\| Tyrosine recombinase xerC [Bacillus cereus AH621], gi\|228614976\|gb\|E...	5.0E-67	[3..299]	[5..301]
gi\|225865812, gi... - gi\|225865812\|ref\|YP_002751190.1\| tyrosine recombinase XerC [Bacillus cereus 03BB102], gi\|225791021\|g... gi\|228812070, gi... - gi\|228947550\|ref\|ZP_04109840.1\| Tyrosine recombinase xerC [Bacillus thuringiensis serovar monterrey ... gi\|218904959, gi... - gi\|218904959\|ref\|YP_002452793.1\| tyrosine recombinase XerC [Bacillus cereus AH820], gi\|218540108\|gb\|... gi\|228935145, gi... - gi\|228935145\|ref\|ZP_04097972.1\| Tyrosine recombinase xerC [Bacillus thuringiensis serovar andalousie... gi\|196042353, gi... - gi\|196042353\|ref\|ZP_03109624.1\| tyrosine recombinase XerC [Bacillus cereus NVH0597-99], gi\|196026809... gi\|228928879, gi... - gi\|228928879\|ref\|ZP_04091911.1\| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pondicheri... gi\|228916468, gi... - gi\|228916468\|ref\|ZP_04080034.1\| Tyrosine recombinase xerC [Bacillus thuringiensis serovar pulsiensis... gi\|254721983 - gi\|254721983\|ref\|ZP_05183772.1\| site-specific tyrosine recombinase XerC [Bacillus anthracis str. A10... gi\|49478402, gi\|... - gi\|49478402\|ref\|YP_037892.1\| site-specific tyrosine recombinase XerC [Bacillus thuringiensis serovar... gi\|229157407, gi... - gi\|229157407\|ref\|ZP_04285485.1\| Tyrosine recombinase xerC [Bacillus cereus ATCC 4342], gi\|228626134\|... gi\|229123345, gi... - gi\|229123345\|ref\|ZP_04252549.1\| Tyrosine recombinase xerC [Bacillus cereus 95/8201], gi\|228660121\|gb...	7.0E-67	[1..299]	[1..299]
gi\|52141657, gi\|... - gi\|52141657\|ref\|YP_085172.1\| site-specific tyrosine recombinase XerC [Bacillus cereus E33L], gi\|5197...	1.0E-66	[1..299]	[1..299]
gi\|74488552, gi\|... - gi\|75763959\|ref\|ZP_00743586.1\| Integrase/recombinase (XerD/RipX family) [Bacillus thuringiensis sero...	1.0E-66	[3..299]	[6..302]
gi\|42782923, gi\|... - gi\|42782923\|ref\|NP_980170.1\| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 10987], g...	1.0E-66	[1..299]	[1..299]
gi\|65321158 - gi\|65321158\|ref\|ZP_00394117.1\| COG4974: Site-specific recombinase XerD [Bacillus anthracis str. A201...	2.0E-66	[3..299]	[6..302]
gi\|47552997, gi\|... - gi\|47570332\|ref\|ZP_00240977.1\| site-specific recombinase, phage integrase family [Bacillus cereus G9...	2.0E-66	[3..299]	[6..302]
gi\|30021919, gi\|... - gi\|30021919\|ref\|NP_833550.1\| site-specific tyrosine recombinase XerC [Bacillus cereus ATCC 14579], g...	3.0E-65	[6..299]	[1..294]
XERC_BACHD - Tyrosine recombinase XerC OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM ... XERC_BACHD - Tyrosine recombinase xerC OS=Bacillus halodurans GN=xerC PE=3 SV=1	3.0E-65	[4..299]	[6..303]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNVKKLLQLF VGYLQIERNY SKYTIASYQN DLEHFVQFME REGISSFLDI TYADVRLYLT  60
   61 TLHDEKLARK SVARKVSSLR SLYRFLMREG YRKDNPFALA SLPKKELSIP KFLYAEELEE 120
  121 LFEVSDTETP LGQRNQALLE LMYATGIRVS ECVNLQLTDI DFAVGTILVM GKGKKQRYIP 180
  181 FGSYAQDALI TYIENGRKQL AEKTEEQSHM VFLNAKGTPL TSRGVRYVLN ELIKKASLTM 240
  241 RISPHILRHT FATHMLDEGA DLRTVQELLG HENLSTTQIY THVSKERLRS VYMKHHPRA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	55.522879
Match:	1a0pA
Description:	SITE-SPECIFIC RECOMBINASE, XERD
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	4.99325011803106	bayes_pls_golite062009
integrase activity	3.60695091575172	bayes_pls_golite062009
catalytic activity	2.22520758916604	bayes_pls_golite062009
structure-specific DNA binding	0.11292854906722	bayes_pls_golite062009
DNA binding	0.10970863758177	bayes_pls_golite062009
nucleic acid binding	0.06580979261817	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: