YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263636, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	218 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263636, gi|....

Description	E-value	Query Range	Subject Range
gi\|49243387, gi\|... - gi\|49484944\|ref\|YP_042165.1\| site-specific recombinase [Staphylococcus aureus subsp. aureus MSSA476]...	2.0E-41	[1..195]	[4..209]
gi\|19570795 - gi\|19570795\|dbj\|BAB83487.2\| site-specific recombinase [Staphylococcus hominis]	9.0E-41	[1..195]	[4..209]
gi\|76496260 - gi\|76496260\|gb\|ABA26585.1\| cassette chromosome recombinase B [Staphylococcus epidermidis]	2.0E-39	[2..195]	[8..210]
gi\|80971649 - gi\|80971649\|gb\|ABB52797.1\| cassette chromosome recombinase B [Staphylococcus warneri]	2.0E-39	[2..195]	[8..210]
gi\|62815933 - gi\|62815933\|emb\|CAH17586.1\| cassette chromosome recombinase B2 [Staphylococcus aureus]	2.0E-39	[2..195]	[8..210]
gi\|110624459, gi... - gi\|98986187\|dbj\|BAE94484.1\| cassette chromosome recombinase B [Staphylococcus aureus], gi\|98986168\|d... gi\|160367113, gi... - gi\|161508304\|ref\|YP_001573963.1\| cassette chromosome recombinase B [Staphylococcus aureus subsp. aur... gi\|76496259 - gi\|76496259\|gb\|ABA26583.1\| cassette chromosome recombinase B [Staphylococcus epidermidis] gi\|87126400, gi\|... - gi\|87160426\|ref\|YP_492757.1\| cassette chromosome recombinase B [Staphylococcus aureus subsp. aureus ... gi\|87160426\|ref\|... - cassette chromosome recombinase B [Staphylococcus aureus subsp. aureus USA300], cassette chromosome ...	2.0E-39	[2..195]	[8..210]
gi\|46560521, gi\|... - gi\|46560521\|tpg\|DAA01835.1\| TPA_exp: cassette chromosome recombinase B type 4 [Staphylococcus epider...	4.0E-39	[2..195]	[8..209]

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Predicted Domain #1

Region A:
Residues: [1-218]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAIIYARVS TTKEAQETSL LRQKDELLHL AERYQMNVIK VIEEQASGYT IERDGILEVL  60
   61 DTIRDEQIDV LLIQDETRLG RGNAKIALMH CLHKEGIKVY TYTHNGELQL SDSDSMVLDI 120
  121 IGIVEEYQRK IHNLKIKRGM QRAVEKGYRP ENNLKNRHLS VGREKKEVPI EEIVRLRKSE 180
  181 LTFEEIAATL RGFGHNVSKA TVHRRYVEYT KQLLDKEE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.522879
Match:	1gdtA
Description:	gamma,delta resolvase (C-terminal domain); gamma,delta resolvase, catalytic domain
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
site-specific recombinase activity	3.0240363733074	bayes_pls_golite062009
transcription regulator activity	1.76956337706487	bayes_pls_golite062009
DNA binding	1.58100039759954	bayes_pls_golite062009
nucleic acid binding	1.46839493313894	bayes_pls_golite062009
catalytic activity	1.20658247466773	bayes_pls_golite062009
transcription factor activity	1.0707787742149	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: