YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30263365, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	390 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30263365, gi|....

Description	E-value	Query Range	Subject Range
gi\|21401332, gi\|... - gi\|65320695\|ref\|ZP_00393654.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	4.0E-70	[1..390]	[1..390]
gi\|229128684, gi... - gi\|229128684\|ref\|ZP_04257662.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus BDRD-... gi\|228637597, gi... - gi\|229145989\|ref\|ZP_04274368.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus BDRD-... gi\|29897066, gi\|... - gi\|30021511\|ref\|NP_833142.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus ATCC 145...	2.0E-69	[1..390]	[1..390]
gi\|52142129, gi\|... - gi\|52142129\|ref\|YP_084700.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus E33L], g... gi\|228986492, gi... - gi\|228986492\|ref\|ZP_04146628.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus thuringiensi...	3.0E-69	[1..390]	[1..390]
gi\|49478214, gi\|... - gi\|49478214\|ref\|YP_037508.1\| cyclopropane-fatty-acyl-phospholipid synthase [Bacillus thuringiensis s...	8.0E-69	[1..390]	[1..390]
gi\|152974142, gi... - gi\|89200054\|ref\|ZP_01178810.1\| Cyclopropane-fatty-acyl-phospholipid synthase [Bacillus cereus subsp....	1.0E-64	[1..390]	[1..389]
gi\|90961926, gi\|... - gi\|90961926\|ref\|YP_535842.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus salivarius...	7.0E-63	[1..390]	[1..390]
gi\|116103590, gi... - gi\|48869717\|ref\|ZP_00322461.1\| COG2230: Cyclopropane fatty acid synthase and related methyltransfera...	1.0E-61	[1..390]	[1..390]
gi\|28379564, gi\|... - gi\|28379564\|ref\|NP_786456.1\| cyclopropane-fatty-acyl-phospholipid synthase [Lactobacillus plantarum ...	4.0E-61	[1..389]	[1..389]
gi\|42519375, gi\|... - gi\|42519375\|ref\|NP_965305.1\| hypothetical protein LJ1503 [Lactobacillus johnsonii NCC 533], gi\|41583...	1.0E-60	[1..388]	[1..389]

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Predicted Domain #1

Region A:
Residues: [1-313]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEELFYKKI LKNLFSDPVQ ITLWNGETIQ YGEGEPQFHV TFHKPLSKKE IAKDPSIAFG  60
   61 EAYMNGDLEI EGNLEKAIQS IYKRQDSFLG DSKLQYFKSK WNFSKQKNKD DIAHHYDIGN 120
  121 DFYKLWLDET MTYSCAYFQN EQDSLTTAQH NKVNHILKKL NLQKGDTLLD IGCGWGELIT 180
  181 AAAKQYGVKA MGVTLSEEQY AKASERIKQE GLTDLVEVSL LDYRDIKNQK FDKIVSVGMI 240
  241 EHVGKDNITQ YFETVNTLLN DGGISLLHCI TSPANGGATN GWIEKYIFPG GYVPAVNELI 300
  301 TNMTNEQFFI VDV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	11.045757
Match:	1qzzA
Description:	Crystal structure of aclacinomycin-10-hydroxylase (RdmB) in complex with S-adensyl-L-methionine (SAM)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.62377578202456	bayes_pls_golite062009
transferase activity	1.20063885869845	bayes_pls_golite062009
transferase activity, transferring one-carbon groups	1.14636302691827	bayes_pls_golite062009
methyltransferase activity	1.12602040164126	bayes_pls_golite062009
transcription factor activity	1.06343802718818	bayes_pls_golite062009
S-adenosylmethionine-dependent methyltransferase activity	0.535429947810431	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [314-390]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ESLRRHYGKT LQHWARNFEN VMEEVRKTKD ERFIRMWRLY LNACAASFFT GNIDLHQFVF  60
   61 TKGINDTIPM TRSYMYE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.69897
Match:	1kp9A
Description:	CmaA1
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: