YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257697, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	868 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257697, gi|....

Description	E-value	Query Range	Subject Range
gi\|49480081, gi\|... - gi\|49480081\|ref\|YP_037192.1\| phosphoenolpyruvate synthase [Bacillus thuringiensis serovar konkukian ...	0.0	[1..868]	[1..868]
gi\|29896753, gi\|... - gi\|30021199\|ref\|NP_832830.1\| phosphoenolpyruvate synthase [Bacillus cereus ATCC 14579], gi\|29896753\|... gi\|229128425, gi... - gi\|229128425\|ref\|ZP_04257406.1\| Pyruvate phosphate dikinase PEP/pyruvate-binding [Bacillus cereus BD...	0.0	[1..868]	[1..868]
gi\|42738117, gi\|... - gi\|42782192\|ref\|NP_979439.1\| phosphoenolpyruvate synthase [Bacillus cereus ATCC 10987], gi\|42738117\|...	0.0	[1..868]	[1..868]
PPS_BACSU - Putative phosphoenolpyruvate synthase OS=Bacillus subtilis GN=pps PE=3 SV=1 gi\|221323295 - gi\|221323295\|ref\|ZP_03604589.1\| phosphoenolpyruvate synthase [Bacillus subtilis subsp. subtilis str.... PPS_BACSU - Putative phosphoenolpyruvate synthase OS=Bacillus subtilis (strain 168) GN=pps PE=3 SV=1 gi\|221314099 - gi\|221314099\|ref\|ZP_03595904.1\| phosphoenolpyruvate synthase [Bacillus subtilis subsp. subtilis str.... gi\|221319021 - gi\|221319021\|ref\|ZP_03600315.1\| phosphoenolpyruvate synthase [Bacillus subtilis subsp. subtilis str....	0.0	[1..867]	[1..865]
gi\|46879913, gi\|... - gi\|46906648\|ref\|YP_013037.1\| phosphoenolpyruvate synthase [Listeria monocytogenes str. 4b F2365], gi...	0.0	[1..868]	[1..866]
gi\|52142418, gi\|... - gi\|52142418\|ref\|YP_084412.1\| phosphoenolpyruvate synthase [Bacillus cereus E33L], gi\|51975887\|gb\|AAU...	0.0	[1..868]	[1..869]
gi\|163940830, gi... - gi\|89205852\|ref\|ZP_01184418.1\| Pyruvate,water dikinase [Bacillus weihenstephanensis KBAB4], gi\|89156...	0.0	[1..868]	[1..868]
gi\|153185255, gi... - gi\|254900644\|ref\|ZP_05260568.1\| phosphoenolpyruvate synthase [Listeria monocytogenes J0161], gi\|1531... gi\|47015060, gi\|... - gi\|47096600\|ref\|ZP_00234189.1\| phosphoenolpyruvate synthase, putative [Listeria monocytogenes str. 1... gi\|133733735, gi... - gi\|254938014\|ref\|ZP_05269711.1\| phosphoenolpyruvate synthase [Listeria monocytogenes F6900], gi\|1531...	0.0	[1..868]	[1..866]
gi\|25499676 - pir\|\|F96965 phosphoenolpyruvate synthase (gene pps) [imported] - Clostridium acetobutylicum gi\|15893824, gi\|... - gi\|15893824\|ref\|NP_347173.1\| phosphoenolpyruvate synthase [Clostridium acetobutylicum ATCC 824], gi\|...	0.0	[1..868]	[1..868]
gi\|47564244, gi\|... - gi\|47564244\|ref\|ZP_00235289.1\| phosphoenolpyruvate synthase [Bacillus cereus G9241], gi\|47558396\|gb\|...	0.0	[1..868]	[1..868]

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Predicted Domain #1

Region A:
Residues: [1-599]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSFVLDFQE IEKTQLSLVG GKGLNLGALS NMQGIQVPEG FCVTTAGYEK AIEQNEELQA  60
   61 LLQQLTKLKR EERVRIGEIS KKIRENIMAV QIPSDVVEAV AHYLSRFGNE HAYAVRSSAT 120
  121 AEDLPYASFA GQQDTYLNII GENAILQHVR KCWASLFTDR AVMYRMQNGF EHNQVSICVV 180
  181 VQKMVFPQAS GILFTADPIT SNRKVLSIDA SFGLGEALVS GLVSADNYKV KEGEIIDKMI 240
  241 ATKKLAIYAL KEGGTETKQN DPVQQKIQTL SDQQILQLVQ IGRQIEAYFG CPQDIEWCLV 300
  301 DHTFYIVQSR PITTLYPIPE ENDEGNHVYI SVGHQQMMTD AMKPLGLSFF LLTTNAPMRK 360
  361 AGGRLFVDAT QQLVLPASRD YLINTLGKSD PLVRDALTTI IERDDFITLL PDEEKEKSAS 420
  421 KSKPPVSSQP EIENDPAIVT ELIRNSEASL EELKQNMQLK SGVDVFDFIL EDIQQLKKVL 480
  481 FNPQSIAVIM AGMNASTWIN EKMEQWLGEK NAADMLSQSV QNNITSEMGL ALMDVADAIR 540
  541 PYPEVITYLQ HVEDDSFLDE LVQYKGGEKA RDTIVAFLNK YGMRCSGEID ITKTRWSEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	129.0
Match:	2olsA
Description:	No description for 2olsA was found.

Predicted Domain #2

Region A:
Residues: [600-730]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTTIIPMILN NIRDFEAGAS KQKFEKGLQE ALNKEEELLD RLQHLPKGKQ KVEETKRMIR  60
   61 NIRNFIGYRE YPKYGMINRY FIYKQALLKE AEQLVQSGVI CEVDDIYYLT FEELHEVVRT 120
  121 NKLDYELIQK Q

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	62.30103
Match:	1pkmA
Description:	THE REFINED THREE-DIMENSIONAL STRUCTURE OF CAT MUSCLE (M1) PYRUVATE KINASE, AT A RESOLUTION OF 2.6 ANGSTROMS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
pyruvate kinase activity	3.17723128577585	bayes_pls_golite062009
catalytic activity	1.30338698387739	bayes_pls_golite062009
transferase activity	0.41272725493735	bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups	0.206397978088409	bayes_pls_golite062009
kinase activity	0.14063689982333	bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor	0.0767582874001252	bayes_pls_golite062009

Predicted Domain #3

Region A:
Residues: [731-868]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KNDYKLYEKL TPPRVMTSDG EIITGKYKRE NLPADAIVGL PVSSGVVEGR ARVILNMEEA  60
   61 NLEEGDILVT AFTDPGWTPL FVSIKGLVTE VGGLMTHGAV IAREYGLPAV VGVENATKRI 120
  121 KDGQRIRVHG TEGYIEML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.09691
Match:	2fm4A
Description:	No description for 2fm4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: