YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262916, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	358 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262916, gi|....

Description	E-value	Query Range	Subject Range
gi\|68446910, gi\|... - gi\|70726186\|ref\|YP_253100.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S...	1.0E-92	[1..356]	[1..356]
gi\|151221842, gi... - gi\|151221842\|ref\|YP_001332664.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutas... gi\|156980054, gi... - gi\|156980054\|ref\|YP_001442313.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutas... gi\|25320067 - pir\|\|E89958 hypothetical protein SA1558 [imported] - Staphylococcus aureus (strain N315) gi\|57286221, gi\|... - gi\|57652035\|ref\|YP_186620.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|88195550, gi\|... - gi\|88195550\|ref\|YP_500356.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|87161271, gi\|... - gi\|87161271\|ref\|YP_494377.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|221142372 - gi\|221142372\|ref\|ZP_03566865.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase... gi\|269203375\|ref... - bifunctional 3-deoxy-7-phosphoheptulonate synthase [Staphylococcus aureus subsp. aureus ED98] gi\|90582972, gi\|... - gi\|90582972\|ref\|ZP_01238733.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2:Chorismate mut... gi\|147741284, gi... - gi\|90585494\|ref\|ZP_01241203.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2:Chorismate mut... gi\|15924727, gi\|... - gi\|15924727\|ref\|NP_372261.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|15927314, gi\|... - gi\|15927314\|ref\|NP_374847.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|255006523 - gi\|255006523\|ref\|ZP_05145124.2\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase... gi\|21204849, gi\|... - gi\|21283409\|ref\|NP_646497.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|253734479, gi... - gi\|253734479\|ref\|ZP_04868644.1\| chorismate mutase [Staphylococcus aureus subsp. aureus TCH130], gi\|2... gi\|49245005, gi\|... - gi\|49486562\|ref\|YP_043783.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|253732387, gi... - gi\|253732387\|ref\|ZP_04866552.1\| chorismate mutase [Staphylococcus aureus subsp. aureus USA300_TCH959... gi\|253315890 - gi\|253315890\|ref\|ZP_04839103.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase... gi\|251814727, gi... - gi\|251814727\|ref\|ZP_04829200.1\| chorismate mutase [Staphylococcus aureus subsp. aureus TCH70], gi\|25... gi\|87127245\|gb\|A... - chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Staphylococcus aureus subsp. aureus U... gi\|160368763, gi... - gi\|161509954\|ref\|YP_001575613.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutas... gi\|221137967 - gi\|221137967\|ref\|ZP_03562769.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase...	6.0E-92	[1..356]	[1..356]
gi\|227851722, gi... - gi\|227899762\|ref\|ZP_04017567.1\| chorismate mutase [Staphylococcus aureus subsp. aureus TCH60], gi\|22... gi\|227557929, gi... - gi\|227557929\|ref\|ZP_03987976.1\| chorismate mutase [Staphylococcus aureus subsp. aureus MN8], gi\|2272... gi\|49242106, gi\|... - gi\|49483977\|ref\|YP_041201.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S...	1.0E-91	[1..356]	[1..356]
gi\|57867264, gi\|... - gi\|57867264\|ref\|YP_188869.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|251811121, gi... - gi\|251811121\|ref\|ZP_04825594.1\| chorismate mutase [Staphylococcus epidermidis BCM-HMP0060], gi\|25180... gi\|27315874, gi\|... - gi\|27468328\|ref\|NP_764965.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S... gi\|242233598, gi... - gi\|242242997\|ref\|ZP_04797442.1\| chorismate mutase [Staphylococcus epidermidis W23144], gi\|242233598\|...	2.0E-91	[1..355]	[1..355]
gi\|89202689, gi\|... - gi\|89202689\|ref\|ZP_01181402.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2:Chorismate mut...	3.0E-91	[1..358]	[3..360]
gi\|228986050, gi... - gi\|228986050\|ref\|ZP_04146194.1\| Chorismate mutase [Bacillus thuringiensis serovar tochigiensis BGSC ... gi\|221240505, gi... - gi\|222096447\|ref\|YP_002530504.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Baci... gi\|229156538, gi... - gi\|229156538\|ref\|ZP_04284628.1\| Chorismate mutase [Bacillus cereus ATCC 4342], gi\|228626932\|gb\|EEK83... gi\|229139588, gi... - gi\|229139588\|ref\|ZP_04268159.1\| Chorismate mutase [Bacillus cereus BDRD-ST26], gi\|228644135\|gb\|EEL00... gi\|206747754, gi... - gi\|206973598\|ref\|ZP_03234516.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Bacil... gi\|217960392, gi... - gi\|217960392\|ref\|YP_002338954.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Baci... gi\|229197131, gi... - gi\|229197131\|ref\|ZP_04323867.1\| Chorismate mutase [Bacillus cereus m1293], gi\|228586356\|gb\|EEK44438.... gi\|47568771, gi\|... - gi\|47568771\|ref\|ZP_00239466.1\| MW1680 [Bacillus cereus G9241], gi\|47554551\|gb\|EAL12907.1\| MW1680 [Ba... gi\|42782054, gi\|... - gi\|42782054\|ref\|NP_979301.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [B...	3.0E-91	[1..358]	[1..358]
gi\|118478284, gi... - gi\|118478284\|ref\|YP_895435.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [... gi\|49479050, gi\|... - gi\|49479050\|ref\|YP_037022.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [B... gi\|225864922, gi... - gi\|225864922\|ref\|YP_002750300.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Baci... gi\|51976034, gi\|... - gi\|52142565\|ref\|YP_084264.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [B... gi\|196026062, gi... - gi\|196042578\|ref\|ZP_03109817.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Bacil... gi\|196026946, gi... - gi\|196042228\|ref\|ZP_03109509.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Bacil... gi\|228598308, gi... - gi\|229185161\|ref\|ZP_04312347.1\| Chorismate mutase [Bacillus cereus BGSC 6E1], gi\|228598308\|gb\|EEK559... gi\|229091953, gi... - gi\|229091953\|ref\|ZP_04223141.1\| Chorismate mutase [Bacillus cereus Rock3-42], gi\|228691434\|gb\|EEL451... gi\|228844193, gi... - gi\|228915546\|ref\|ZP_04079135.1\| Chorismate mutase [Bacillus thuringiensis serovar pulsiensis BGSC 4C...	3.0E-91	[1..358]	[1..358]
gi\|229191047, gi... - gi\|229191047\|ref\|ZP_04318037.1\| Chorismate mutase [Bacillus cereus ATCC 10876], gi\|228592445\|gb\|EEK5... gi\|206971838, gi... - gi\|206971838\|ref\|ZP_03232787.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Bacil... gi\|228921610, gi... - gi\|228921610\|ref\|ZP_04084930.1\| Chorismate mutase [Bacillus thuringiensis serovar huazhongensis BGSC... gi\|218232562, gi... - gi\|218232562\|ref\|YP_002367668.1\| chorismate mutase/phospho-2-dehydro-3-deoxyheptonate aldolase [Baci... gi\|228780245, gi... - gi\|228979548\|ref\|ZP_04139878.1\| Chorismate mutase [Bacillus thuringiensis Bt407], gi\|228780245\|gb\|EE... gi\|228972965, gi... - gi\|228972965\|ref\|ZP_04133560.1\| Chorismate mutase [Bacillus thuringiensis serovar thuringiensis str.... gi\|228800556, gi... - gi\|228959167\|ref\|ZP_04120866.1\| Chorismate mutase [Bacillus thuringiensis serovar pakistani str. T13... gi\|228819681, gi... - gi\|228940069\|ref\|ZP_04102643.1\| Chorismate mutase [Bacillus thuringiensis serovar berliner ATCC 1079... gi\|229110400, gi... - gi\|229110400\|ref\|ZP_04239972.1\| Chorismate mutase [Bacillus cereus Rock1-15], gi\|228673140\|gb\|EEL284... gi\|228703255, gi... - gi\|229080131\|ref\|ZP_04212659.1\| Chorismate mutase [Bacillus cereus Rock4-2], gi\|228703255\|gb\|EEL5571... gi\|228712717, gi... - gi\|229070421\|ref\|ZP_04203665.1\| Chorismate mutase [Bacillus cereus F65185], gi\|228712717\|gb\|EEL64648... gi\|29896611, gi\|... - gi\|30021058\|ref\|NP_832689.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [B... gi\|229046651, gi... - gi\|229046651\|ref\|ZP_04192300.1\| Chorismate mutase [Bacillus cereus AH676], gi\|228724686\|gb\|EEL75994.... gi\|228604131, gi... - gi\|229179233\|ref\|ZP_04306587.1\| Chorismate mutase [Bacillus cereus 172560W], gi\|228604131\|gb\|EEK6159... gi\|228632374, gi... - gi\|229151160\|ref\|ZP_04279367.1\| Chorismate mutase [Bacillus cereus m1550], gi\|228632374\|gb\|EEK88996.... gi\|229145539, gi... - gi\|229145539\|ref\|ZP_04273923.1\| Chorismate mutase [Bacillus cereus BDRD-ST24], gi\|228637992\|gb\|EEK94... gi\|228655146, gi... - gi\|229128287\|ref\|ZP_04257268.1\| Chorismate mutase [Bacillus cereus BDRD-Cer4], gi\|228655146\|gb\|EEL11...	4.0E-91	[1..358]	[1..358]
gi\|229060627, gi... - gi\|229060627\|ref\|ZP_04197985.1\| Chorismate mutase [Bacillus cereus AH603], gi\|228718627\|gb\|EEL70255.... gi\|228749056, gi... - gi\|229012213\|ref\|ZP_04169391.1\| Chorismate mutase [Bacillus mycoides DSM 2048], gi\|228749056\|gb\|EEL9... gi\|229167675, gi... - gi\|229167675\|ref\|ZP_04295410.1\| Chorismate mutase [Bacillus cereus AH621], gi\|228615797\|gb\|EEK72887.... gi\|89208085, gi\|... - gi\|89208085\|ref\|ZP_01186607.1\| Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2:Chorismate mut... gi\|228649532, gi... - gi\|229133831\|ref\|ZP_04262654.1\| Chorismate mutase [Bacillus cereus BDRD-ST196], gi\|228649532\|gb\|EEL0...	7.0E-91	[1..358]	[1..358]
gi\|82751326, gi\|... - gi\|82751326\|ref\|YP_417067.1\| bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase [S...	1.0E-90	[1..356]	[1..356]

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Predicted Domain #1

Region A:
Residues: [1-64]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MANHELDQLR KQVDEINLQL LHLLNKRGEI VQKIGEQKQV QGTKRFDPVR EREVLDMIAE  60
   61 NNEG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.58
Match:	2qbvA
Description:	No description for 2qbvA was found.

Predicted Domain #2

Region A:
Residues: [65-358]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PFETSTVQHI FKTIFKASLE LQEDDNRKAL LVSRKKKQEN TIVDVKGELI GNGTQTFIMG  60
   61 PCAVESLEQV RQVGQAMKDQ GLKLMRGGAF KPRTSPYDFQ GLGVEGLQIL RQVADEFDLA 120
  121 IISEILNPND VEMALDYVDV IQVGARNMQN FDLLRAVGKV NKPVLLKRGL AATIDEFINA 180
  181 AEYIIAQGND QIILCERGIR TYERATRNTL DISAVPILKK ETHLPVVVDV THSTGRRDLL 240
  241 LPTAKAALAI GADAVMAEVH PDPAVALSDS AQQMDIPEFH RFMEELKGFK NKLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	73.522879
Match:	1rzmA
Description:	Crystal structure of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHPS) from Thermotoga maritima complexed with Cd2+, PEP and E4P
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
3-deoxy-8-phosphooctulonate synthase activity	4.50706953743409	bayes_pls_golite062009
catalytic activity	3.04075198078553	bayes_pls_golite062009
3-deoxy-7-phosphoheptulonate synthase activity	2.96394105633886	bayes_pls_golite062009
lyase activity	1.40463692440932	bayes_pls_golite062009
dihydrodipicolinate synthase activity	1.2687335039487	bayes_pls_golite062009
aldehyde-lyase activity	0.85265356790496	bayes_pls_golite062009
oxo-acid-lyase activity	0.550191215286759	bayes_pls_golite062009
transaldolase activity	0.509911537449121	bayes_pls_golite062009
fructose-bisphosphate aldolase activity	0.39039247818141	bayes_pls_golite062009
carbon-carbon lyase activity	0.21317671520101	bayes_pls_golite062009
transferase activity, transferring aldehyde or ketonic groups	0.11947175216212	bayes_pls_golite062009
carbon-oxygen lyase activity	0.0228214205561801	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: