YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30257395, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30257395, gi|....

Description	E-value	Query Range	Subject Range
RPIA_BACHK - Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian GN=rpiA PE=3 SV=1 RPIA_BACHK - Ribose-5-phosphate isomerase A OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=rpiA PE=...	7.0E-68	[1..220]	[1..220]
RPIA_BACCZ - Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ZK / E33L) GN=rpiA PE=3 SV=1	1.0E-67	[1..220]	[1..220]
RPIA_BACCR - Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 14579 / DSM 31 / JCM 2152 / NBRC 1530... gi\|228800686, gi... - gi\|228959025\|ref\|ZP_04120726.1\| Ribose-5-phosphate isomerase A [Bacillus thuringiensis serovar pakis... gi\|229128134, gi... - gi\|229128134\|ref\|ZP_04257116.1\| Ribose-5-phosphate isomerase A [Bacillus cereus BDRD-Cer4], gi\|22865...	5.0E-67	[1..220]	[1..220]
gi\|47569055, gi\|... - gi\|47569055\|ref\|ZP_00239745.1\| ribose 5-phosphate isomerase [Bacillus cereus G9241], gi\|47554324\|gb\|...	5.0E-67	[1..220]	[1..220]
gi\|221240352, gi... - gi\|222096294\|ref\|YP_002530351.1\| ribose 5-phosphate isomerase [Bacillus cereus Q1], gi\|221240352\|gb\|... RPIA_BACC1 - Ribose-5-phosphate isomerase A OS=Bacillus cereus (strain ATCC 10987 / NRS 248) GN=rpiA PE=3 SV=1	4.0E-66	[1..220]	[1..220]
RPIA_BACWK - Ribose-5-phosphate isomerase A OS=Bacillus weihenstephanensis (strain KBAB4) GN=rpiA PE=3 SV=1	2.0E-65	[1..219]	[2..220]
gi\|81299395, gi\|... - gi\|81299395\|ref\|YP_399603.1\| ribose-5-phosphate isomerase A [Synechococcus elongatus PCC 7942], gi\|8... gi\|56685907, gi\|... - gi\|56750948\|ref\|YP_171649.1\| ribose-5-phosphate isomerase A [Synechococcus elongatus PCC 6301], gi\|5...	1.0E-61	[3..219]	[16..236]
RPIA_SYNEL - Ribose-5-phosphate isomerase A OS=Synechococcus elongatus GN=rpiA PE=3 SV=1 RPIA_THEEB - Ribose-5-phosphate isomerase A OS=Thermosynechococcus elongatus (strain BP-1) GN=rpiA PE=3 SV=1	5.0E-61	[3..213]	[9..223]
RPIA_LACRD - Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain DSM 20016) GN=rpiA PE=3 SV=1 gi\|227532672, gi... - gi\|227532672\|ref\|ZP_03962721.1\| ribose-5-phosphate isomerase [Lactobacillus reuteri MM4-1A], gi\|2271... gi\|227363510, gi... - gi\|227363510\|ref\|ZP_03847630.1\| ribose-5-phosphate isomerase [Lactobacillus reuteri MM2-3], gi\|22707... RPIA_LACRJ - Ribose-5-phosphate isomerase A OS=Lactobacillus reuteri (strain JCM 1112) GN=rpiA PE=3 SV=1 gi\|91803463, gi\|... - gi\|92089761\|ref\|ZP_01274691.1\| Ribose 5-phosphate epimerase [Lactobacillus reuteri 100-23], gi\|91803... gi\|183224285, gi... - gi\|89091213\|ref\|ZP_01164232.1\| Ribose 5-phosphate isomerase [Lactobacillus reuteri JCM 1112], gi\|890...	7.0E-61	[3..220]	[6..224]

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Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLKQIAGEY AATFVKDGMK IGLGTGSTAY WTIQKLGQRV KEGLSIQAVP TSKETEALAQ  60
   61 QLNIPLISLN DVQSLDLTID GADEIDSNLQ LIKGGGGALL REKIVASSSK ELIIIVDESK 120
  121 VVTRLGTFPL PIEIIPFAWK QTESKIQSLG CQTTLRLKNN ETFITDNNNM IIDCIFPNHI 180
  181 PTPSDLHKRL KMITGVVETG LFVNMTSKAI IGTKNGIQEL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.30103
Match:	1uj4A
Description:	Crystal structure of Thermus thermophilus ribose-5-phosphate isomerase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ribose-5-phosphate isomerase activity	2.23318567990318	bayes_pls_golite062009
6-phosphogluconolactonase activity	1.97756803122763	bayes_pls_golite062009
intramolecular oxidoreductase activity	0.61058174487002	bayes_pls_golite062009
catalytic activity	0.424959044318554	bayes_pls_golite062009
nucleic acid binding	0.281224782944976	bayes_pls_golite062009
binding	0.228090098582514	bayes_pls_golite062009
glucosamine-6-phosphate deaminase activity	0.111185777194415	bayes_pls_golite062009
intramolecular oxidoreductase activity, interconverting aldoses and ketoses	0.075853172283603	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: