YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262505, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	426 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262505, gi|....

Description	E-value	Query Range	Subject Range
gi\|110827356, gi... - gi\|111615223\|ref\|ZP_01402289.1\| Sugar phosphate permease-like [Verminephrobacter eiseniae EF01-2], g...	6.0E-45	[13..417]	[297..701]
SNF3 - Plasma membrane low glucose sensor that regulates glucose transport; contains 12 predicted transmemb... SNF3_YEAST - High-affinity glucose transporter SNF3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=S...	2.0E-41	[21..418]	[102..554]
gi\|78495751, gi\|... - gi\|78495751\|ref\|ZP_00847969.1\| Major facilitator superfamily MFS_1 [Rhodopseudomonas palustris BisB1...	2.0E-40	[3..409]	[437..859]
gi\|60470323, gi\|... - gi\|66816473\|ref\|XP_642246.1\| sugar transporter family protein [Dictyostelium discoideum AX4], gi\|604... gi\|60470323 - gi\|60470323\|gb\|EAL68303.1\| hypothetical protein DDB0205325 [Dictyostelium discoideum]	8.0E-40	[14..419]	[177..624]
gi\|67536615, gi\|... - gi\|67542336\|ref\|ZP_00420273.1\| General substrate transporter:Major facilitator superfamily [Burkhold...	2.0E-39	[9..414]	[269..697]
gi\|85110133 - gi\|85110133\|ref\|XP_963279.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28924953, gi\|... - gi\|32417950\|ref\|XP_329453.1\| hypothetical protein [Neurospora crassa], gi\|28924953\|gb\|EAA34043.1\| hy...	7.0E-38	[4..423]	[370..806]
gi\|218202668 - gi\|218202668\|gb\|EEC85095.1\| hypothetical protein OsI_32467 [Oryza sativa Indica Group] PHT44_ORYSJ - Probable anion transporter 4, chloroplastic OS=Oryza sativa subsp. japonica GN=PHT4;4 PE=2 SV=1	1.0E-37	[7..409]	[172..588]
gi\|68389434 - gi\|68389434\|ref\|XP_691920.1\| PREDICTED: similar to solute carrier family 17 (sodium-dependent inorga...	4.0E-37	[14..421]	[141..587]
gi\|92892758 - gi\|92892758\|gb\|ABE91392.1\| Major facilitator superfamily MFS_1 [Medicago truncatula]	6.0E-36	[2..409]	[164..585]

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Predicted Domain #1

Region A:
Residues: [1-426]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNAISSNKTF MDRIGIPSNL TWGYIGIIVF MIGDGLEQGW LSPYLVEKGL TLEHAAFLFT  60
   61 IYGITVSASS WFSGVFVQMW GPRKVMTFGL VSFILGSIGF IGIGIQHMNY PVILICYALR 120
  121 GFGYPLFAYS FLVWVSYSTP QQMLSRAVGW FWFVFQLGLS VIGAFYSSYM VPKIGEIATL 180
  181 WSALIFVVVG GLFSIVVNKD KFKAQTVSAN KSSELLKGIT IAFENPKVGI GGIVKIINSA 240
  241 AQFGFVVFLP TYMMKYNFTM TEWLQIWGTL FFVNMVFNII FGIVGDKFGW INTIKWFGGV 300
  301 GCGIVTLALY YVPQMVGHNY WAILFVACCY GATLAGYVPL TALVPSLSPE NKGAAMSVLN 360
  361 LGSGLSAFVG PLVVTAFIGP LGVGGVMWIF AGLYFFGAFL THFLTIPKEN EMEQDLNTKS 420
  421 GEQFSV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	30.09691
Match:	1pw4A
Description:	Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
carbohydrate transmembrane transporter activity	3.16484357749134	bayes_pls_golite062009
sugar transmembrane transporter activity	2.77541159976289	bayes_pls_golite062009
transporter activity	2.54286095434601	bayes_pls_golite062009
sugar:hydrogen symporter activity	2.21878849047485	bayes_pls_golite062009
cation:sugar symporter activity	2.21878849047485	bayes_pls_golite062009
transmembrane transporter activity	2.01247278444729	bayes_pls_golite062009
substrate-specific transporter activity	1.77039368764865	bayes_pls_golite062009
solute:hydrogen symporter activity	1.68455852928739	bayes_pls_golite062009
substrate-specific transmembrane transporter activity	1.66673693200184	bayes_pls_golite062009
monosaccharide transmembrane transporter activity	1.18541894298057	bayes_pls_golite062009
active transmembrane transporter activity	0.33203350453105	bayes_pls_golite062009
polyol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
alcohol transmembrane transporter activity	0.24475883286552	bayes_pls_golite062009
glycerol transmembrane transporter activity	0.2309068592963	bayes_pls_golite062009
ion transmembrane transporter activity	0.18188709249385	bayes_pls_golite062009
binding	0.105551689569449	bayes_pls_golite062009
glycerol-3-phosphate transmembrane transporter activity	1.26964387230144E-4	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: