YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|30262418, gi\|...
Organism:	Bacillus anthracis str. Ames
Length:	466 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30262418, gi|....

Description	E-value	Query Range	Subject Range
gi\|152023392, gi... - gi\|89201716\|ref\|ZP_01180452.1\| Protoporphyrinogen oxidase [Bacillus cereus subsp. cytotoxis NVH 391-...	1.0E-70	[2..465]	[3..466]
gi\|164712409, gi... - gi\|165871832\|ref\|ZP_02216475.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A0488], gi\|16471... gi\|254758625 - gi\|254758625\|ref\|ZP_05210652.1\| protoporphyrinogen oxidase [Bacillus anthracis str. Australia 94] gi\|254753527 - gi\|254753527\|ref\|ZP_05205563.1\| protoporphyrinogen oxidase [Bacillus anthracis str. Vollum] gi\|254740188 - gi\|254740188\|ref\|ZP_05197880.1\| protoporphyrinogen oxidase [Bacillus anthracis str. Kruger B] gi\|167635434, gi... - gi\|167635434\|ref\|ZP_02393748.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A0442], gi\|16752... gi\|254734168 - gi\|254734168\|ref\|ZP_05191881.1\| protoporphyrinogen oxidase [Bacillus anthracis str. Western North Am... gi\|167640183, gi... - gi\|167640183\|ref\|ZP_02398449.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A0193], gi\|16751... gi\|254725542 - gi\|254725542\|ref\|ZP_05187324.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A1055] gi\|170667996, gi... - gi\|170688101\|ref\|ZP_02879313.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A0465], gi\|17066... gi\|254682751 - gi\|254682751\|ref\|ZP_05146612.1\| protoporphyrinogen oxidase [Bacillus anthracis str. CNEVA-9066] gi\|170127442, gi... - gi\|170707667\|ref\|ZP_02898119.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A0389], gi\|17012... gi\|229264781, gi... - gi\|229600373\|ref\|YP_002865618.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A0248], gi\|2292... gi\|177654154, gi... - gi\|177654154\|ref\|ZP_02936127.1\| protoporphyrinogen oxidase [Bacillus anthracis str. A0174], gi\|17208... gi\|228662701, gi... - gi\|229120696\|ref\|ZP_04249939.1\| Protoporphyrinogen oxidase [Bacillus cereus 95/8201], gi\|228662701\|g... gi\|190566592, gi... - gi\|190566592\|ref\|ZP_03019509.1\| protoporphyrinogen oxidase [Bacillus anthracis Tsiankovskii-I], gi\|1... gi\|228944798, gi... - gi\|228944798\|ref\|ZP_04107161.1\| Protoporphyrinogen oxidase [Bacillus thuringiensis serovar monterrey... gi\|196036441, gi... - gi\|196036441\|ref\|ZP_03103837.1\| protoporphyrinogen oxidase [Bacillus cereus W], gi\|195990915\|gb\|EDX5... gi\|228926223, gi... - gi\|228926223\|ref\|ZP_04089298.1\| Protoporphyrinogen oxidase [Bacillus thuringiensis serovar pondicher... gi\|196031836, gi... - gi\|196037594\|ref\|ZP_03104905.1\| protoporphyrinogen oxidase [Bacillus cereus NVH0597-99], gi\|19603183... gi\|228845947, gi... - gi\|228913755\|ref\|ZP_04077381.1\| Protoporphyrinogen oxidase [Bacillus thuringiensis serovar pulsiensi... gi\|227006090, gi... - gi\|227816077\|ref\|YP_002816086.1\| protoporphyrinogen oxidase [Bacillus anthracis str. CDC 684], gi\|22... gi\|49476830, gi\|... - gi\|49476830\|ref\|YP_035325.1\| protoporphyrinogen oxidase [Bacillus thuringiensis serovar konkukian st... gi\|51977708, gi\|... - gi\|52144239\|ref\|YP_082589.1\| protoporphyrinogen oxidase [Bacillus cereus E33L], gi\|51977708\|gb\|AAU19... gi\|65318456, gi\|... - gi\|65318456\|ref\|ZP_00391415.1\| COG1232: Protoporphyrinogen oxidase [Bacillus anthracis str. A2012], ... gi\|49184022, gi\|... - gi\|49184022\|ref\|YP_027274.1\| protoporphyrinogen oxidase [Bacillus anthracis str. Sterne], gi\|4917794...	5.0E-68	[2..466]	[3..467]
gi\|42736163, gi\|... - gi\|42780244\|ref\|NP_977491.1\| protoporphyrinogen oxidase [Bacillus cereus ATCC 10987], gi\|42736163\|gb...	6.0E-67	[2..466]	[3..467]
gi\|163861184, gi... - gi\|89205626\|ref\|ZP_01184194.1\| Protoporphyrinogen oxidase [Bacillus weihenstephanensis KBAB4], gi\|89...	6.0E-66	[2..464]	[3..465]
gi\|30019225, gi\|... - gi\|30019225\|ref\|NP_830856.1\| protoporphyrinogen oxidase [Bacillus cereus ATCC 14579], gi\|29894768\|gb... gi\|229126480, gi... - gi\|229126480\|ref\|ZP_04255494.1\| Protoporphyrinogen oxidase [Bacillus cereus BDRD-Cer4], gi\|228656869...	9.0E-65	[6..466]	[2..462]
gi\|56379040, gi\|... - gi\|56419198\|ref\|YP_146516.1\| protoporphyrinogen oxidase [Geobacillus kaustophilus HTA426], gi\|563790...	3.0E-64	[2..464]	[6..466]
gi\|49479323, gi\|... - gi\|49479323\|ref\|YP_036539.1\| protoporphyrinogen oxidase [Bacillus thuringiensis serovar konkukian st...	7.0E-64	[1..466]	[1..466]
gi\|221322374 - gi\|221322374\|ref\|ZP_03603668.1\| protoporphyrinogen oxidase [Bacillus subtilis subsp. subtilis str. S... gi\|221318099 - gi\|221318099\|ref\|ZP_03599393.1\| protoporphyrinogen oxidase [Bacillus subtilis subsp. subtilis str. J... PPOX_BACSU - Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168) GN=hemY PE=1 SV=1 gi\|221313176 - gi\|221313176\|ref\|ZP_03594981.1\| protoporphyrinogen oxidase [Bacillus subtilis subsp. subtilis str. N... PPOX_BACSU - Protoporphyrinogen oxidase OS=Bacillus subtilis GN=hemY PE=1 SV=1	2.0E-63	[2..461]	[6..468]
gi\|52143067, gi\|... - gi\|52143067\|ref\|YP_083763.1\| protoporphyrinogen oxidase [Bacillus cereus E33L], gi\|51976536\|gb\|AAU18...	7.0E-63	[1..466]	[1..466]

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Predicted Domain #1

Region A:
Residues: [1-466]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTVVVIGGG ITGLSTMFYL EKFKKDNNID LNLILVEKEE YLGGKIHSVE EKDFIMESGA  60
   61 DSIVARNEHV MPLVKDLNLE GEMVYNETGI SYIYSDNTLH PIPSDTIFGI PMSVESLFSS 120
  121 TLVSTKGKIV ALKDFITKNK EFTKDTSLSL FLESFLGKEL VERQIAPVLS GVYSGKLNEL 180
  181 TMASTLPYLL DYKNKYGSII KGFEENKKQF QSAGNKKFVS FKGGLSTIID RLEEMLTETV 240
  241 VKKGAVTTAV SKQGDRYEIS FANHDSIHAD YVVLAAPHDI AETLLQSNEL NEQFHTFKNS 300
  301 SLVSIYLGFD ILDEQLPADG TGFIVTENSD LHCDACTWTS RKWKHTSGKQ KLLVRMFYKS 360
  361 TNPVYETIKN YSEEELVRVA LYDIEKSLGI KGEPEVVEVT NWKDLMPKYH LEHNQALQTL 420
  421 QEKMMNLYPN IYLAGASYYG VGIGACIGNG KNIANEIIAT LNEPSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	50.0
Match:	1sezA
Description:	Crystal Structure of Protoporphyrinogen IX Oxidase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
oxidoreductase activity, acting on NADH or NADPH	5.26950448055146	bayes_pls_golite062009
oxidoreductase activity	4.51724585323847	bayes_pls_golite062009
oxygen-dependent protoporphyrinogen oxidase activity	1.3578742399915	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors, NAD or NADP as acceptor	1.20561532241252	bayes_pls_golite062009
oxidoreductase activity, acting on sulfur group of donors	1.07656675953489	bayes_pls_golite062009
catalytic activity	1.03127962968326	bayes_pls_golite062009
oxidoreductase activity, acting on the CH-NH group of donors	0.945028138297487	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.705416796630992	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.639301957614768	bayes_pls_golite062009
cation transmembrane transporter activity	0.521196797955847	bayes_pls_golite062009
inorganic cation transmembrane transporter activity	0.377084832476769	bayes_pls_golite062009
NADPH-adrenodoxin reductase activity	0.31749398611457	bayes_pls_golite062009
ferrous iron binding	0.166200528859874	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: